PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013589609.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Dof
Protein Properties Length: 242aa    MW: 27107.4 Da    PI: 9.7193
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013589609.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof117.94.1e-373897362
          zf-Dof  3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                    +  lkcprCds ntkfCyynnyslsqPr++Ck+CrryWt+GG+lrnvP+Gg++r+++k s
  XP_013589609.1 38 QPVLKCPRCDSVNTKFCYYNNYSLSQPRHYCKNCRRYWTRGGTLRNVPIGGSTRNKNKPS 97
                    56789*************************************************988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-293595IPR003851Zinc finger, Dof-type
PfamPF027014.8E-324095IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.1464195IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104379IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010227Biological Processfloral organ abscission
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MMTSSHQSHT TSFNPRRIKT KAKPPHQISH MRPSPAAQPV LKCPRCDSVN TKFCYYNNYS  60
LSQPRHYCKN CRRYWTRGGT LRNVPIGGST RNKNKPSSLQ VISSPPPIVA PLSSHELVDG  120
FRMNRAMIDP SSTAFPGGFS GYMFSLDPNY NLASSSIESL SSLNQDLHQK LQQQRLFTSM  180
FQQDSPPVMF HNVELLPPST ATTEWAFDRS AIGEATSGSN ENNGEREGNL GSWYYNPNNS  240
MP
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed at the base of all organs of the flower, especially in the abscission zone (AZ) of petals, stamens and sepals. Expressed at low levels in sepals, filaments, stigmatic papillae, tips of young siliques, and at the base of pedicels and leaf trichomes. {ECO:0000269|PubMed:20466844}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Involved in the negative regulation of floral organ abscission by binding to the typical DOF 5'-AAAG-3' sequences in the promoter of ADPG2/PGAZAT, and by down-regulating its expression. ADPG2/PGAZAT is an abscission-related and cell wall hydrolyzing polygalacturonase. May act through the interaction with ZFP2, an abscission-related transcription factor. {ECO:0000269|PubMed:20466844}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00478DAPTransfer from AT4G38000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013589609.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2286131e-50AK228613.1 Arabidopsis thaliana mRNA for Dof zinc finger protein - like, complete cds, clone: RAFL15-43-I22.
GenBankAL0355381e-50AL035538.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F20D10 (ESSA project).
GenBankAL1615921e-50AL161592.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 88.
GenBankBT0057671e-50BT005767.1 Arabidopsis thaliana clone RAFL15-43-I22 (R20996) putative Dof zinc finger protein (At4g38000) mRNA, complete cds.
GenBankBT0060921e-50BT006092.1 Arabidopsis thaliana clone U20996 putative Dof zinc finger protein (At4g38000) mRNA, complete cds.
GenBankCP0026871e-50CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013589609.10.0PREDICTED: dof zinc finger protein DOF4.7
SwissprotQ84K521e-114DOF47_ARATH; Dof zinc finger protein DOF4.7
TrEMBLA0A0D3A1450.0A0A0D3A145_BRAOL; Uncharacterized protein
STRINGBo1g003220.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM152861518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38000.14e-97DNA binding with one finger 4.7