PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013589746.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 154aa    MW: 17752.2 Da    PI: 8.8919
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013589746.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM124.77.6e-3961353128
             NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     +G+rF+Pt eel+++yLk+k  +k+  ++++i+e++i+ ++P++Lp  +k+k+++ ewyfFs r+  ++++k ++r+t sg+Wk tg+d e+++k
  XP_013589746.1   6 VGYRFSPTGEELINYYLKNKNLDKPWLVDDAINEINICAHDPESLPslSKLKSNDLEWYFFSLREYYEPEKKGTKRTTPSGFWKVTGSDIEIKDK 100
                     7************************999999***************5448888888**************************************9 PP

             NAM  96 ..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +g ++g+kktLv+++g++ +g++t+Wv h y++
  XP_013589746.1 101 rgHGVVIGIKKTLVYHQGKSTNGVRTHWVTHVYHI 135
                     777788***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100537.8894151IPR003441NAC domain
SuperFamilySSF1019411.96E-415141IPR003441NAC domain
PfamPF023653.6E-216135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MEKNLVGYRF SPTGEELINY YLKNKNLDKP WLVDDAINEI NICAHDPESL PSLSKLKSND  60
LEWYFFSLRE YYEPEKKGTK RTTPSGFWKV TGSDIEIKDK RGHGVVIGIK KTLVYHQGKS  120
TNGVRTHWVT HVYHITSLSL NQVTIFQIEF GSSV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-21713518140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) mediated by calpain or its functional homolog. Regulates cytokinin signaling during cell division. {ECO:0000269|PubMed:17098812}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013589746.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Stabilized by cytokinins. {ECO:0000269|PubMed:17098812}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013589746.11e-111PREDICTED: NAC domain-containing protein 68-like
SwissprotA8MQY12e-59NAC68_ARATH; NAC domain-containing protein 68
TrEMBLA0A0D3DZV21e-110A0A0D3DZV2_BRAOL; Uncharacterized protein
STRINGBo9g004090.11e-111(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19821971
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01540.21e-53NAC with transmembrane motif1
Publications ? help Back to Top
  1. Guo T, et al.
    Lamin-like Proteins Negatively Regulate Plant Immunity through NAC WITH TRANSMEMBRANE MOTIF1-LIKE9 and NONEXPRESSOR OF PR GENES1 in Arabidopsis thaliana.
    Mol Plant, 2017. 10(10): p. 1334-1348
    [PMID:28943325]