PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013589953.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 288aa    MW: 32493.3 Da    PI: 5.6061
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013589953.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox573.4e-1879132356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k+++++ eq+++Le+ Fe  +++  e++ +LA+ lgL+ rq+ +WFqNrRa++k
  XP_013589953.1  79 KKRRLNMEQVKTLEKTFELGNKLEPEMKMQLARALGLQPRQIAIWFQNRRARWK 132
                     456899***********************************************9 PP
2HD-ZIP_I/II129.71.2e-4178169192
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     ekkrrl+ eqvk+LE++Fe  +kLepe K++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy++Lk+++dalk++ne L++++++L++e++
  XP_013589953.1  78 EKKRRLNMEQVKTLEKTFELGNKLEPEMKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDTLKQQFDALKADNELLQTHNQKLQAEIM 169
                     69**************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.37E-1966136IPR009057Homeodomain-like
PROSITE profilePS5007116.7374134IPR001356Homeobox domain
SMARTSM003892.2E-1877138IPR001356Homeobox domain
CDDcd000865.96E-1779135No hitNo description
PfamPF000461.4E-1579132IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.3E-1986133IPR009057Homeodomain-like
PRINTSPR000314.3E-5105114IPR000047Helix-turn-helix motif
PROSITE patternPS000270109132IPR017970Homeobox, conserved site
PRINTSPR000314.3E-5114130IPR000047Helix-turn-helix motif
PfamPF021832.8E-16134176IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009744Biological Processresponse to sucrose
GO:0048826Biological Processcotyledon morphogenesis
GO:0080022Biological Processprimary root development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MSCNNGMSFF PSNFMIQTSY EDDHPHQAPS LAPLLPSCSI PQDLHGFASF LGKRSPIEVG  60
NNMNGEEDYS DDGSHMGEKK RRLNMEQVKT LEKTFELGNK LEPEMKMQLA RALGLQPRQI  120
AIWFQNRRAR WKTKQLEKDY DTLKQQFDAL KADNELLQTH NQKLQAEIMG LKNKEQIESI  180
NLNKETEGSC SNRSDNSSDN LRLDISTALP SVDSTITGGH PPAPQTVGRH FFPPSPAAAT  240
TTTTTMQFFQ NSSSGQSMVK EENSISNMLC AMDDHSGFWP WLDQQQYN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126134RRARWKTKQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in leaves and flowers. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00225DAPTransfer from AT1G69780Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013589953.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3533110.0AK353311.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-34-O11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009105645.10.0PREDICTED: homeobox-leucine zipper protein ATHB-13
RefseqXP_013589953.10.0PREDICTED: homeobox-leucine zipper protein ATHB-13
RefseqXP_013698957.10.0homeobox-leucine zipper protein ATHB-13
RefseqXP_013728836.10.0homeobox-leucine zipper protein ATHB-13
SwissprotQ8LC030.0ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBLA0A0D3CZD90.0A0A0D3CZD9_BRAOL; Uncharacterized protein
TrEMBLA0A3P6FZV10.0A0A3P6FZV1_BRAOL; Uncharacterized protein
TrEMBLM4DID90.0M4DID9_BRARP; Uncharacterized protein
STRINGBra016266.1-P0.0(Brassica rapa)
STRINGBo6g110380.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26332770
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Chan RL
    Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
    J. Exp. Bot., 2015. 66(19): p. 5929-43
    [PMID:26136262]
  3. Wang X, et al.
    Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana.
    Sci China Life Sci, 2018. 61(1): p. 79-87
    [PMID:28887625]
  4. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]