PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013590312.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 196aa    MW: 22233.2 Da    PI: 9.7848
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013590312.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.67.9e-153677346
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     +++++Ed+l+++++++lG++ W++Ia +++ gRt+++++ +w +
   XP_013590312.1 36 NFSKDEDDLILKLHALLGNR-WSLIAGRLP-GRTDNEVRIHWET 77
                     79******************.*********.***********75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.11E-152188IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.1E-202683IPR009057Homeodomain-like
PROSITE profilePS5129422.1212983IPR017930Myb domain
SMARTSM007177.1E-133381IPR001005SANT/Myb domain
CDDcd001674.73E-113677No hitNo description
PfamPF002492.1E-133677IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010023Biological Processproanthocyanidin biosynthetic process
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MNKISHGALS RPSGMLHRAK RYRGRKYAKP ELKQSNFSKD EDDLILKLHA LLGNRWSLIA  60
GRLPGRTDNE VRIHWETCVE KKLMKMGIDP TNHRLYHHTN YTSRRYINAS YKKHETDIIS  120
DQSSSVSESC NMTLLPVSST KFSEDNASAG HNWLPDLNIG LVPMKTVTSL PVCSLQEPSE  180
SSNHGSTSQE TLLLFR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-14148339108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013590312.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN3791070.0JN379107.1 Brassica oleracea var. acephala myb-like transcription factor 2 (MYBL2-1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013590312.11e-145PREDICTED: myb-related protein 308
TrEMBLA0A0D3CZR91e-144A0A0D3CZR9_BRAOL; Uncharacterized protein
STRINGBo6g112670.11e-145(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71030.13e-84MYB-like 2