PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013590335.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

ERF

Protein Properties

Length: 165aa MW: 18362.8 Da PI: 10.5561

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013590335.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	62.2	1.1e-19	82	136	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpse.ngkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr+++ +g+W+AeIr+ + g+r r +lg+f+taeeAa a+++a+ +l g XP_013590335.1 82 KKFRGVRQRP-WGKWAAEIRCGRAlKGRRDRLWLGTFDTAEEAALAYDNAAVQLIG 136 59******.******54433367********************99877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF038123	1.0E-36	1	164	IPR017392	AP2/ERF transcription factor ERF/PTI6
CDD	cd00018	3.98E-23	82	143	No hit	No description
PROSITE profile	PS51032	21.549	83	144	IPR001471	AP2/ERF domain
Pfam	PF00847	2.2E-13	83	136	IPR001471	AP2/ERF domain
SMART	SM00380	4.5E-31	83	150	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	7.85E-20	83	146	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	1.5E-27	83	144	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.3E-11	84	95	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.3E-11	110	126	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 165 aa Download sequence Send to blast
MKRIVRISFT DAEATDSSSS EEEAEQLSEA SQARRRGKRL VKEIVIDSSD SDNRLDVCKT 60 RFKIRIPPEI LKAATAEKKN KKKFRGVRQR PWGKWAAEIR CGRALKGRRD RLWLGTFDTA 120 EEAALAYDNA AVQLIGPHAP TNFSFSAENQ EVKMVAGASA VARGA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	2e-16	83	143	14	71	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013590335.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189401	0.0	AC189401.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB057E05, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013590335.1	1e-117	PREDICTED: ethylene-responsive transcription factor ERF070-like
Swissprot	Q9C995	3e-85	ERF70_ARATH; Ethylene-responsive transcription factor ERF070
TrEMBL	A0A0D3CXD5	1e-116	A0A0D3CXD5_BRAOL; Uncharacterized protein
STRING	Bo6g094430.1	1e-116	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4000	23	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G71130.1	7e-59	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]