PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013590391.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 227aa MW: 25228.9 Da PI: 10.215

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013590391.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.4	1.3e-08	135	175	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri +++ L++l+P +K++ a++L +A++Y+k L XP_013590391.1 135 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 175 699***************87.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.434	126	175	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.4E-14	127	185	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.44E-14	130	185	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.3E-14	132	181	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.2E-6	136	175	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.08E-6	149	180	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MENSDMLMNM MMQQMEKLPD HFSNPNPNPN SHNIMMLSES NTHPFFFNPN HTHLPLLDQT 60 ITHQPGLNFR YAPSTSSSLP DKRGGGGGDN ANMAAMREMI FRIAVMQPIH IDPESVKPPK 120 RKNVRISKDP QSVAARHRRE RISERIRILQ RLVPGGTKMD TASMLDEAIH YVKFLKKQVQ 180 SLEEHAVVNG GGVASAPTGV GGGYGGKGCG TMRSDHHQML GNTQILR

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed in the developing septum, transmitting tract and stigma. {ECO:0000269\|PubMed:17855426}.
Uniprot	TISSUE SPECIFICITY: Gynoecium. {ECO:0000269\|PubMed:17855426}.

Functional Description ? help Back to Top
Source	Description
UniProt	Required for the female reproductive tract development and fertility. {ECO:0000269\|PubMed:17855426}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013590391.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269\|PubMed:17855426}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK175679	0.0	AK175679.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH037), complete cds, clone: RAFL22-18-N14.
GenBank	AK175912	0.0	AK175912.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH037), complete cds, clone: RAFL22-57-C09.
GenBank	AL132976	0.0	AL132976.2 Arabidopsis thaliana DNA chromosome 3, BAC clone F11C1.
GenBank	BT010607	0.0	BT010607.1 Arabidopsis thaliana At3g50330 gene, complete cds.
GenBank	CP002686	0.0	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013590391.1	1e-169	PREDICTED: transcription factor HEC2-like
Refseq	XP_013717886.1	1e-169	transcription factor HEC2
Swissprot	Q9SND4	1e-113	HEC2_ARATH; Transcription factor HEC2
TrEMBL	A0A0D3A9N9	1e-167	A0A0D3A9N9_BRAOL; Uncharacterized protein
TrEMBL	A0A3N6RS02	1e-167	A0A3N6RS02_BRACR; Uncharacterized protein
TrEMBL	A0A3P6FP30	1e-167	A0A3P6FP30_BRAOL; Uncharacterized protein
STRING	Bo1g084640.1	1e-168	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1559	27	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50330.1	1e-95	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Zhu L, et al. A Negative Feedback Loop between PHYTOCHROME INTERACTING FACTORs and HECATE Proteins Fine-Tunes Photomorphogenesis in Arabidopsis. Plant Cell, 2016. 28(4): p. 855-74 [PMID:27073231]