PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013590457.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 209aa    MW: 23772 Da    PI: 9.3421
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013590457.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.53e-2070125156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rrk+ ++tk+q ++Lee F +n+++++++++eLA+ l+L++rqV vWFqNrRa+ k
  XP_013590457.1  70 RRKKLRLTKDQSHILEESFIQNHTLTHKQKQELATFLKLSQRQVEVWFQNRRARSK 125
                     79999*************************************************98 PP
2HD-ZIP_I/II106.61.9e-3471159190
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                     +kk+rl+k+q+++LEesF ++++L++++K+ela+ L+l++rqv+vWFqnrRAR k+k++E+++e+Lk+ + +lke+n++L+keveeLr +
  XP_013590457.1  71 RKKLRLTKDQSHILEESFIQNHTLTHKQKQELATFLKLSQRQVEVWFQNRRARSKLKHTEMECEYLKKLFGSLKEQNRQLQKEVEELR-A 159
                     69*************************************************************************************9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.45E-2054126IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.7E-2058125IPR009057Homeodomain-like
PROSITE profilePS5007118.12367127IPR001356Homeobox domain
SMARTSM003893.4E-1869131IPR001356Homeobox domain
CDDcd000861.88E-1670128No hitNo description
PfamPF000461.5E-1770125IPR001356Homeobox domain
PROSITE patternPS000270102125IPR017970Homeobox, conserved site
SMARTSM003405.4E-14127170IPR003106Leucine zipper, homeobox-associated
PfamPF021836.9E-7127161IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MAVSPNSSFL ELTISIPSFS PSPSLPSSSD HMVRDLDINQ TPKMEKDREW IMISATPHVN  60
DDDGNSGGRR RKKLRLTKDQ SHILEESFIQ NHTLTHKQKQ ELATFLKLSQ RQVEVWFQNR  120
RARSKLKHTE MECEYLKKLF GSLKEQNRQL QKEVEELRAL KPVSASVLTM CPRCERVTVA  180
ADNGSNAVEE GTALRSQSRM TISSSSTLC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16775GRRRKKLRL
26874RRRKKLR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00226DAPTransfer from AT1G70920Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013590457.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013590457.11e-155PREDICTED: homeobox-leucine zipper protein ATHB-X-like
RefseqXP_013700971.11e-155homeobox-leucine zipper protein ATHB-X
SwissprotQ8GXM71e-102ATHBX_ARATH; Homeobox-leucine zipper protein ATHB-X
TrEMBLA0A0D3CZQ91e-153A0A0D3CZQ9_BRAOL; Uncharacterized protein
TrEMBLA0A3P6GD831e-153A0A3P6GD83_BRAOL; Uncharacterized protein
STRINGBo6g112570.11e-154(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM133801624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G70920.11e-92homeobox-leucine zipper protein 18
Publications ? help Back to Top
  1. Gibalová A, et al.
    Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte.
    Plant Reprod, 2017. 30(1): p. 1-17
    [PMID:27896439]