PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013590514.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 216aa    MW: 24867.5 Da    PI: 9.6513
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013590514.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.61e-1871125256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ ++ keq ++Lee F +n++++ ++++eLA  l+L++rqV vWFqNrRa+ k
  XP_013590514.1  71 RKKLRLIKEQSHILEESFIQNNTLTPKQKQELAILLKLSQRQVEVWFQNRRARSK 125
                     66677789*********************************************98 PP
2HD-ZIP_I/II104.96.2e-3471159190
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                     +kk+rl keq+++LEesF ++++L+p++K+ela  L+l++rqv+vWFqnrRAR k+k+ E+++e+Lkr++++lke+n+rL+ eveeLr +
  XP_013590514.1  71 RKKLRLIKEQSHILEESFIQNNTLTPKQKQELAILLKLSQRQVEVWFQNRRARSKLKHREMECEYLKRWFESLKEQNRRLQIEVEELR-A 159
                     69*************************************************************************************9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.56E-1856127IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.0E-1761125IPR009057Homeodomain-like
PROSITE profilePS5007116.89267127IPR001356Homeobox domain
SMARTSM003893.8E-1769131IPR001356Homeobox domain
CDDcd000861.15E-1470128No hitNo description
PfamPF000464.7E-1671125IPR001356Homeobox domain
PROSITE patternPS000270102125IPR017970Homeobox, conserved site
SMARTSM003406.8E-14127170IPR003106Leucine zipper, homeobox-associated
PfamPF021831.6E-8130161IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MAVSPNSSSL ELTISIQSFS PSPSHPLSGD HMVRDLGINQ TPKKEEDRGW IMIGTTPHIN  60
EEDENLGGRP RKKLRLIKEQ SHILEESFIQ NNTLTPKQKQ ELAILLKLSQ RQVEVWFQNR  120
RARSKLKHRE MECEYLKRWF ESLKEQNRRL QIEVEELRAL KPVLASVLSM CPLCERVTNA  180
ADNDLKKKQI MTNAVEEATA RRSQSRMAFS SSSSLC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16874RPRKKLR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013590514.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013590514.11e-158PREDICTED: homeobox-leucine zipper protein ATHB-X-like
RefseqXP_013741169.11e-158homeobox-leucine zipper protein ATHB-X-like
SwissprotQ8GXM74e-93ATHBX_ARATH; Homeobox-leucine zipper protein ATHB-X
TrEMBLA0A3P6H4401e-157A0A3P6H440_BRAOL; Uncharacterized protein
STRINGBra016174.1-P1e-106(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM133801624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G70920.15e-95homeobox-leucine zipper protein 18
Publications ? help Back to Top
  1. Gibalová A, et al.
    Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte.
    Plant Reprod, 2017. 30(1): p. 1-17
    [PMID:27896439]