PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013590528.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

TCP

Protein Properties

Length: 351aa MW: 40052.6 Da PI: 5.2237

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013590528.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	125.2	7.2e-39	83	232	1	129
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....ssssasec........eaesssssa 82 +a+kkdrhski T +g+RdRRvRls+ +a++fFdLqd+LGfdk+skt++WLl+++ +aikel++ + + e ++ ++ XP_013590528.1 83 QAVKKDRHSKIQTGQGLRDRRVRLSIGIARQFFDLQDMLGFDKASKTLDWLLKKSRRAIKELVQGkkvntD--ED--FaniggeveE---EEDEE 170 589**********************************************************99765331..22..2234432221...11111 PP TCP 83 snsssg................kaaksaakskksqksaasalnlak.esrakarararertrek 129 +++ + +++ + k+ +++k++ + +n++ srakar +a+e tre XP_013590528.1 171 DEE--DdgdksfvygsspdsleEEMVCEVKKAQKRKKKIELRNISSkGSRAKARGKAKEITRET 232 111..1234466778888888777888888888888888888888779*********99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.2E-38	85	233	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	33.908	86	144	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MSSSNNDYNN GNNGVYPFSL YLSPLAGRQD IIRNPYNHQP TPSPGQMVSA VPESLINYMS 60 FSSNRAVNQQ GFEIPEVSRE IKQAVKKDRH SKIQTGQGLR DRRVRLSIGI ARQFFDLQDM 120 LGFDKASKTL DWLLKKSRRA IKELVQGKKV NTDEDFANIG GEVEEEEDEE DEEDDGDKSF 180 VYGSSPDSLE EEMVCEVKKA QKRKKKIELR NISSKGSRAK ARGKAKEITR ETTYDHPETI 240 SEITQTEIMD PLKRSIIFNE GEDMTHSLCK EATQEFDSQE CTLSKTKVNL PTNMDQSYNQ 300 HYGTFMLKDQ GSSSNYNNIL PQNLDFYYDQ NPFIDQPFCA VTKTNFPRGF P

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MSSSNNDYNN GNNGVYPFSL YLSPLAGRQD IIRNPYNHQP TPSPGQMVSA VPESLINYMS  60
FSSNRAVNQQ GFEIPEVSRE IKQAVKKDRH SKIQTGQGLR DRRVRLSIGI ARQFFDLQDM  120
LGFDKASKTL DWLLKKSRRA IKELVQGKKV NTDEDFANIG GEVEEEEDEE DEEDDGDKSF  180
VYGSSPDSLE EEMVCEVKKA QKRKKKIELR NISSKGSRAK ARGKAKEITR ETTYDHPETI  240
SEITQTEIMD PLKRSIIFNE GEDMTHSLCK EATQEFDSQE CTLSKTKVNL PTNMDQSYNQ  300
HYGTFMLKDQ GSSSNYNNIL PQNLDFYYDQ NPFIDQPFCA VTKTNFPRGF P

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	6e-13	91	144	1	54	Putative transcription factor PCF6
5zkt_B	6e-13	91	144	1	54	Putative transcription factor PCF6
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	196	202	VKKAQKR

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed transiently in early stages of floral meristems development but continuously in axillary shoot meristems, specifically in the dorsal part (adaxial). {ECO:0000269\|PubMed:11470410}.
Uniprot	TISSUE SPECIFICITY: Axillary shoot and floral meristems. {ECO:0000269\|PubMed:11470410}.

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in petal morphogenesis. {ECO:0000269\|PubMed:17940055}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013590528.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013590528.1	0.0	PREDICTED: transcription factor TCP1-like
Refseq	XP_013590529.1	0.0	PREDICTED: transcription factor TCP1-like
Swissprot	Q9FYG7	1e-161	TCP1_ARATH; Transcription factor TCP1
TrEMBL	A0A0D3CYL4	0.0	A0A0D3CYL4_BRAOL; Uncharacterized protein
STRING	Bo6g103670.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6733	27	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67260.2	1e-147	TCP family protein

Publications ? help Back to Top
Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]