PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013590695.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 241aa    MW: 26456.1 Da    PI: 4.5981
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013590695.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.22.3e-194191155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +gy+GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++aa++ ++g
  XP_013590695.1 41 PGYRGVRMRT-WGKWVSEIREPRK---KSRIWLGTFSTAEMAARAHDAAALTIKG 91
                    79*****998.**********843...6**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.2E-134191IPR001471AP2/ERF domain
CDDcd000185.00E-2341101No hitNo description
PROSITE profilePS5103223.2484299IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-2242100IPR016177DNA-binding domain
SMARTSM003801.6E-3542105IPR001471AP2/ERF domain
PRINTSPR003678.2E-114354IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-3243100IPR001471AP2/ERF domain
PRINTSPR003678.2E-116581IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MTESSISSVK QPSPVEEETH PHREDEESHR TNNKKRSRPD PGYRGVRMRT WGKWVSEIRE  60
PRKKSRIWLG TFSTAEMAAR AHDAAALTIK GASAVLNFPE LATFLPRPAS SSPRDVQAAA  120
AVAAAMDFSS SSSAVVISDP TTVVPELQLS SSSSYSSFTS SLTLSPSSEE AASSTAEELS  180
EIVELPSLDN EPWSEFVYVD PAYPPSSPWY FNNCYSFYYH SDETGTSMGE PFDSSSFCLF  240
P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1843991572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00245DAPTransfer from AT1G77200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013590695.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013590695.11e-174PREDICTED: ethylene-responsive transcription factor ERF037
SwissprotO806541e-98ERF37_ARATH; Ethylene-responsive transcription factor ERF037
TrEMBLA0A0D3D1C01e-173A0A0D3D1C0_BRAOL; Uncharacterized protein
STRINGBo6g121150.11e-174(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77200.11e-78ERF family protein