PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013590798.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 432aa    MW: 48935.9 Da    PI: 5.9712
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013590798.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.91.6e-52291561128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     l+pGfrFhPtdeelv++yLk+kv gk++++ ++i evdiyk+ePwdL   +++k++++ewyf+s  dkky +g r nrat++gyWkatgkd+e+ 
  XP_013590798.1  29 LAPGFRFHPTDEELVSYYLKRKVLGKPVRF-DAIGEVDIYKHEPWDLAvfSRLKTRDQEWYFYSALDKKYGNGARMNRATNKGYWKATGKDREIR 122
                     579************************999.99**************8544899999************************************** PP

             NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     + + +  g+kktLvf++grap+g +t+Wvmheyrl
  XP_013590798.1 123 R-DVQILGMKKTLVFHSGRAPDGLRTNWVMHEYRL 156
                     9.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.15E-6024181IPR003441NAC domain
PROSITE profilePS5100557.3729180IPR003441NAC domain
PfamPF023656.2E-2731156IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MGRESMAVVE SSPPSAAPPP GTAVSATSLA PGFRFHPTDE ELVSYYLKRK VLGKPVRFDA  60
IGEVDIYKHE PWDLAVFSRL KTRDQEWYFY SALDKKYGNG ARMNRATNKG YWKATGKDRE  120
IRRDVQILGM KKTLVFHSGR APDGLRTNWV MHEYRLVDYE TESNGNLVQD AYVLCRIFHK  180
NNIGPPSGNR YAPFMEEEWS DDRVALIPGV DVRVMAEPLP QANGNNHMGQ PESKDLININ  240
EPPRETTQMD IEVSHHENNN NNRNDEVEEA LKREQTEEDE RPPPPPVCVL NKEAPLPLLQ  300
YKRRRQNEST RTTQDHSSST ITVDNTPTLV SSTAAAATNT AISALLEFSL MGISDKKENS  360
QPIHKEASPP TPEEKLNDLK KEVHQMSVER ETFKLEMMSA EAMISILQSR IDALRQENDE  420
LKKNSANGHL ML
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-472418212167NO APICAL MERISTEM PROTEIN
1ut4_B1e-472418212167NO APICAL MERISTEM PROTEIN
1ut7_A1e-472418212167NO APICAL MERISTEM PROTEIN
1ut7_B1e-472418212167NO APICAL MERISTEM PROTEIN
3swm_A1e-472418215170NAC domain-containing protein 19
3swm_B1e-472418215170NAC domain-containing protein 19
3swm_C1e-472418215170NAC domain-containing protein 19
3swm_D1e-472418215170NAC domain-containing protein 19
3swp_A1e-472418215170NAC domain-containing protein 19
3swp_B1e-472418215170NAC domain-containing protein 19
3swp_C1e-472418215170NAC domain-containing protein 19
3swp_D1e-472418215170NAC domain-containing protein 19
4dul_A1e-472418212167NAC domain-containing protein 19
4dul_B1e-472418212167NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in floral organs, and, at low levels, in other organs. {ECO:0000269|PubMed:25578968}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC050 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). Regulates siRNA-dependent post-transcriptional gene silencing (PTGS) through SGS3 expression modulation (PubMed:28207953). Required during pollen development (PubMed:19237690). {ECO:0000269|PubMed:19237690, ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990, ECO:0000269|PubMed:28207953}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013590798.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by type III effector proteins (TTEs) secreted by the pathogenic bacteria P.syringae pv. tomato DC3000 during basal defense. {ECO:0000269|PubMed:16553893}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013590798.10.0PREDICTED: NAC domain-containing protein 78-like
SwissprotQ9SQY00.0NAC52_ARATH; NAC domain containing protein 52
TrEMBLA0A0D3AEQ10.0A0A0D3AEQ1_BRAOL; Uncharacterized protein
STRINGBo1g143840.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17802880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10490.20.0NAC domain containing protein 52
Publications ? help Back to Top
  1. Higgins JD,Ferdous M,Osman K,Franklin FC
    The RecQ helicase AtRECQ4A is required to remove inter-chromosomal telomeric connections that arise during meiotic recombination in Arabidopsis.
    Plant J., 2011. 65(3): p. 492-502
    [PMID:21265901]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang S, et al.
    C-terminal domains of a histone demethylase interact with a pair of transcription factors and mediate specific chromatin association.
    Cell Discov, 2019.
    [PMID:26617990]
  4. Butel N,Le Masson I,Bouteiller N,Vaucheret H,Elmayan T
    sgs1: a neomorphic nac52 allele impairing post-transcriptional gene silencing through SGS3 downregulation.
    Plant J., 2017. 90(3): p. 505-519
    [PMID:28207953]
  5. Elmayan T, et al.
    Arabidopsis mutants impaired in cosuppression.
    Plant Cell, 1998. 10(10): p. 1747-58
    [PMID:9761800]