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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
XP_013590808.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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| Family |
GRAS |
| Protein Properties |
Length: 451aa MW: 50338 Da PI: 6.8854 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_013590808.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 413.6 | 1.8e-126 | 51 | 451 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaal.............. 81
l++lL+++A+++s+++ ++aq++L+ l ++sp+gd+++Rl++ ft+AL+ r+ ++ ++++t+e++ss+++++
XP_013590808.1 51 LRRLLFTAADFISQSNVSAAQNILSILTSNSSPYGDSTERLVHLFTKALSVRIGL-----SENAATWTTNEMTSSTVFTSSvckeqflfrtknnn 140
689**************************************************87.....45555555555554444333346667788899999 PP
GRAS 82 ........kl.fsevsPilkfshltaNqaIleavege...ervHiiDfdisqGlQWpaLlqaLasRp......egppslRiTgvgspesgskeel 158
l +++++P+++fshltaNqaIl+a+e++ ++Hi+D+disqGlQWp+L+qaLa+R+ +ppslRiTg+g+ + + l
XP_013590808.1 141 nsdlescyYLwLNQLTPFIRFSHLTANQAILDATETNngnGALHILDLDISQGLQWPPLMQALAERSssnpssTPPPSLRITGCGR----DVTVL 231
99888765226************************9888799************************97766655699*********....***** PP
GRAS 159 eetgerLakfAeelgvpfefnvlvak..rledl..eleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqead 247
++tg+rL++fA++lg++f+f++lv +l+ l +++ L+++ gE++aVn+v+ lhr++++ +++ ++L+++ksl+P++v+++e+ea+
XP_013590808.1 232 NRTGDRLTRFANSLGLQFQFHTLVIAeeDLAGLllQIRLLALSAvqGESIAVNCVHFLHRFFNDAGDMIG---HFLSAIKSLNPRIVTMAEREAN 323
**********************944312443223366666665556****************99999999...********************** PP
GRAS 248 hnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342
h+++sF++rf+eal++++a+fdslea+lp++s+er ++E++++g ei +vva+e aer++rh+++e W+e++++ GF +vp++++a +qaklllr
XP_013590808.1 324 HGDPSFVNRFSEALDHFMAIFDSLEATLPPNSRERLTLEQRWFGMEILDVVAAEAAERKQRHRRFEVWEEMMKRHGFANVPIGSFAFSQAKLLLR 418
*********************************************************************************************** PP
GRAS 343 kvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
++ s+gy+++ ++sl+lgWk+r L+svS+W+
XP_013590808.1 419 LHYpSEGYNLQFLNDSLFLGWKNRLLFSVSSWK 451
********************************8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 451 aa
Download sequence Send
to blast |
MNQKSIFLSF QMLASFKSSS SSSEDATENP PPPPPLCLAS SSAATSAAHH LRRLLFTAAD 60
FISQSNVSAA QNILSILTSN SSPYGDSTER LVHLFTKALS VRIGLSENAA TWTTNEMTSS 120
TVFTSSVCKE QFLFRTKNNN NSDLESCYYL WLNQLTPFIR FSHLTANQAI LDATETNNGN 180
GALHILDLDI SQGLQWPPLM QALAERSSSN PSSTPPPSLR ITGCGRDVTV LNRTGDRLTR 240
FANSLGLQFQ FHTLVIAEED LAGLLLQIRL LALSAVQGES IAVNCVHFLH RFFNDAGDMI 300
GHFLSAIKSL NPRIVTMAER EANHGDPSFV NRFSEALDHF MAIFDSLEAT LPPNSRERLT 360
LEQRWFGMEI LDVVAAEAAE RKQRHRRFEV WEEMMKRHGF ANVPIGSFAF SQAKLLLRLH 420
YPSEGYNLQF LNDSLFLGWK NRLLFSVSSW K
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed in the axils of leaf primordia and leaves from P1 to P20/22. In the axil of P1, expressed in 3 to 5 cell layers including the L1 to L3 layers of the shoot apical meristem (SAM). Then, extends from 1 or 2 cell layers in the adaxial-abaxial dimension. From P5 to P22, expression is restricted to a 1 to 2 cell-layer domain located within primordium. In the axils of older leaf primordia, expression decreases until it is no longer detectable in the axils of primordia older than P20/P22. {ECO:0000269|PubMed:12730136}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269|PubMed:18500650}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269|PubMed:12730136}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | HQ324234 | 0.0 | HQ324234.1 Brassica oleracea cultivar T9 transcription factor LAS (LAS) gene, complete cds. |
