PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013590909.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 198aa    MW: 23226 Da    PI: 4.5697
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013590909.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM65.51.6e-2081401128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                     lp+GfrF+Ptd e+ +++L++k+ +++++  +v +e+ di++  P+dLp   + +e++wyf++++   +     +    ++++Wk+ g+++ vl+
  XP_013590909.1   8 LPVGFRFRPTDCEISKYFLTRKALEQRMRGPNVPEEChDIFSRRPRDLPG--YPRETHWYFYCRKLDGQV----TYN--SHSIWKQIGEETGVLD 94 
                     79****************************99999999***********4..34789******9876543....333..3579***********9 PP

             NAM  95 k..kgelvglkktLvfy..........kgrapkgektdWvmheyrl 128
                        +++lvg+k+ ++f             ++ ++ + +W+m+e++l
  XP_013590909.1  95 PknNDTLVGIKRPFTFVdhkeepddilLSDEDEPPQYNWFMDEFSL 140
                     8666677**********766555554436777888*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.49E-267157IPR003441NAC domain
PROSITE profilePS5100528.0958157IPR003441NAC domain
PfamPF023653.7E-149140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MEPKHKALPV GFRFRPTDCE ISKYFLTRKA LEQRMRGPNV PEECHDIFSR RPRDLPGYPR  60
ETHWYFYCRK LDGQVTYNSH SIWKQIGEET GVLDPKNNDT LVGIKRPFTF VDHKEEPDDI  120
LLSDEDEPPQ YNWFMDEFSL PLTISETDWV VCHVFRKNNE PESEEEGENE EKETVKAESL  180
DLLMEKDGNV LPPSPSPP
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013590909.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325430.0AC232543.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH006F04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013590909.11e-146PREDICTED: protein ATAF2-like
RefseqXP_013701074.11e-146NAC domain-containing protein 104-like
TrEMBLA0A078FEP11e-144A0A078FEP1_BRANA; BnaC06g13440D protein
TrEMBLA0A0D3CT731e-144A0A0D3CT73_BRAOL; Uncharacterized protein
STRINGBo6g064960.11e-145(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86041736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56520.11e-79NAC family protein