PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013590924.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 189aa    MW: 21433.4 Da    PI: 8.6952
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013590924.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.12e-101663555
                    HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                     + +E++RR ++++ ++eL +llP+    + + l   + L +A +YIk+Lq
  XP_013590924.1 16 RKTIEKNRRIQMKNLYSELNSLLPQT---SRESLALPDQLDEAANYIKKLQ 63
                    5789*********************9...8999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.54E-4967No hitNo description
PROSITE profilePS5088810.9691162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-81677IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.59E-91678IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-61763IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00271768IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0050832Biological Processdefense response to fungus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MDQSHLNASQ SRSVDRKTIE KNRRIQMKNL YSELNSLLPQ TSRESLALPD QLDEAANYIK  60
KLQVNVEKKR ERKRKLLATT AFEKLNSTGS SSMSSSVDLS MPRRLPRIEI QETGPVLHIF  120
LVTSVEHKFI FHEITRLITE EAGAEMTHAG YSIVDDAVFH TLQCKVEDCD YGAGTRISES  180
LKKLVNTVN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16675EKKRERKRKL
26875KRERKRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013590924.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013590924.11e-139PREDICTED: transcription factor bHLH36-like
RefseqXP_013669852.11e-139transcription factor bHLH162-like
SwissprotF4JIJ78e-91BH162_ARATH; Transcription factor bHLH162
TrEMBLA0A0D3A4P61e-137A0A0D3A4P6_BRAOL; Uncharacterized protein
STRINGBo1g022660.11e-138(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12782592
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.19e-85bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]