PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013591069.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 251aa    MW: 26685.5 Da    PI: 4.3423
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013591069.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.00029147168223
                     EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                     kC+ Cg+sF ++     H+r H
  XP_013591069.1 147 KCNVCGRSFLSWKAVFGHLRAH 168
                     7*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.3E-5143170No hitNo description
PROSITE profilePS501578.642146168IPR007087Zinc finger, C2H2
PROSITE patternPS000280148168IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MSDPEKTKVN TEERINENSD ESDYLWSDEE EEGEMREIVL ALPALSLSDV DQVTRQKAVA  60
AADLLIAAAQ EAAVTKDNME QEVGGSGGTV KKKKARRPRT VMLDDLADVA GASGSEATVS  120
AGEEEPAKKP RKKGSPKLIN PPEGPPKCNV CGRSFLSWKA VFGHLRAHRD RGYSGFLPPP  180
TFNAAVEASG GDVAASCGGG GFGLGTGGLK IDLNADPIDE EEEECGTTTP KFDLNRSPPQ  240
DEEDAKEDKA E
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013591069.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013591069.10.0PREDICTED: uncharacterized protein LOC106299535
RefseqXP_013649624.10.0uncharacterized protein LOC106354269
RefseqXP_013649636.10.0uncharacterized protein LOC106354277
TrEMBLA0A0D3A1Q30.0A0A0D3A1Q3_BRAOL; Uncharacterized protein
TrEMBLA0A3P6F7260.0A0A3P6F726_BRAOL; Uncharacterized protein
STRINGBo1g006290.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58752241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35700.19e-58C2H2 family protein