PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013591135.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 231aa    MW: 27084.9 Da    PI: 10.0581
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013591135.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like45.31.9e-14115164555
         G2-like   5 rWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      Wt+e H +F++a++ L G e   Pk+il +m+v++Lt  +v+ HL  Y+ 
  XP_013591135.1 115 LWTCENHLKFLSAISYL-GDEDSHPKSILSIMNVPSLTHREVARHLESYKA 164
                     5****************.9999**************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011013.017161IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23009.0E-7194No hitNo description
SuperFamilySSF521724.98E-5193IPR011006CheY-like superfamily
SuperFamilySSF466898.87E-10109168IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.7E-13114169IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-11115165IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MPHIDSHSFY TSLLTKDIPL ILISSEGKRN KSSNSLEERA CYFLTRPIHE KDINNMLQHV  60
LPNKSQKLEK LSIPNNAEDV SEVRINQMKA FRENLRRQRT EVNNIESKVR RRSNLWTCEN  120
HLKFLSAISY LGDEDSHPKS ILSIMNVPSL THREVARHLE SYKAKVDRMN ETLSRKEWIP  180
TNKTFEYPSD YKYPFTLSNI AKQKNSGKNL IRERDTKLKF YLGGQMDLSF I
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013591135.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894891e-151AC189489.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB084K02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013591135.11e-171PREDICTED: putative two-component response regulator-like APRR6
SwissprotQ9C9F62e-60APRR6_ARATH; Putative two-component response regulator-like APRR6
TrEMBLA0A3P6H5P51e-170A0A3P6H5P5_BRAOL; Uncharacterized protein
STRINGBo6g106810.11e-127(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136851424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68210.18e-63pseudo-response regulator 6