PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013591162.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 224aa    MW: 25541.9 Da    PI: 9.656
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013591162.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF35.61.2e-1129651546
                    H.....HHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
          SRF-TF 15 k.....RrngilKKAeELSvLCdaevaviifsstgkl 46
                    k     R ++ilKKA ELS+LC+ e++vi +  +g+l
  XP_013591162.1 29 KpflllREKTILKKALELSILCENEICVIHYDREGNL 65
                    44444499***********************999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.28E-1222106IPR002100Transcription factor, MADS-box
PROSITE profilePS500669.1663565IPR002100Transcription factor, MADS-box
PfamPF003191.5E-63565IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MDSLSSSSTS TKMKNNNKLS VRNQTRFKKP FLLLREKTIL KKALELSILC ENEICVIHYD  60
REGNLVNAYP EDQCQVKDIL QRYNRLSDRE KVKKNTNLSQ FYNKKLVDEK RRSLTDAEER  120
KRFTKKVGAF KGSLEDKLQI VKDRVRDLLY SQTGSQSFTN LLMSGDHVSA SSDQYLLGPA  180
SCATDASNHE SKFSVFLFNH ETATFTQLPN SASSSFDQGL IGTY
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013591162.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013591162.11e-165PREDICTED: agamous-like MADS-box protein AGL93
TrEMBLA0A0D3CP841e-164A0A0D3CP84_BRAOL; Uncharacterized protein
STRINGBo6g014440.11e-164(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11759729
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27580.16e-38AGAMOUS-like 89