PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013591181.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 233aa MW: 26148.6 Da PI: 8.0978

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013591181.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28	3.9e-09	115	158	4	52
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52 a n +E+rRR +i++++e+L++l P++ kK + a++L ++ I+ XP_013591181.1 115 ARNTAEKRRRTDIKTKIENLKQLTPNC-----KKRDIASTLDCIIDNIR 158 789***********************9.....89999999999888776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.58E-11	108	170	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.2E-10	108	168	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.843	111	160	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.54E-8	114	162	No hit	No description
Pfam	PF00010	5.8E-6	115	158	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.2E-7	117	166	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MSNMNNDQES IQFWSSLLHS LADSDPKDDH LSEISSPIMV MSTSMAIDVS PKPFNAPRDG 60 HKAGPQKAIA ETGDISIDEG GQRSAEKHIE VIKKEGEKEE IKNFGKNKRP RTNEARNTAE 120 KRRRTDIKTK IENLKQLTPN CKKRDIASTL DCIIDNIRWM KHYVESQSMG PMLPLGMKMD 180 FPAPWFPSIP PNFIMPPFSG FTPGETSCAY GNQNIEPSTT KGFNNQPHSS RSM

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013591181.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013591181.1	1e-174	PREDICTED: putative transcription factor bHLH056 isoform X1
TrEMBL	A0A0D3CXW3	1e-173	A0A0D3CXW3_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6GTI4	1e-173	A0A3P6GTI4_BRAOL; Uncharacterized protein
STRING	Bo6g097200.1	1e-174	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15740	7	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28800.1	5e-11	bHLH family protein