PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013591325.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 244aa MW: 27702.3 Da PI: 5.13

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013591325.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22.7	1.8e-07	63	116	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +++ n++Er RR r+ ++ +L +llP +s+ ++kK +i ++v YI +L XP_013591325.1 63 KKQERNANERLRRMRLHASYLTLGTLLPDQSSSSKKKWCAPSIMDRVVTYIPKL 116 67889**********************88889999************876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	7.07E-9	57	129	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	10.956	62	116	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.6E-7	62	121	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.3E-4	63	116	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MSDHQILESS LLDDLFHIPA ETIVEEFREK DDTFRAQSES KGKEVVIVLH DEDVHGSSSG 60 AAKKQERNAN ERLRRMRLHA SYLTLGTLLP DQSSSSKKKW CAPSIMDRVV TYIPKLLNEV 120 EELTIRKKKL AEDIESEKSQ RLERQDPQTR AISVLELGES GDEVVVQISM KKEKEDEFSN 180 LLNVMEMQGS SILSASTSLV CRDQRVVCYN LHVKMDEKPC EGDDYITVLK NNITSSLSDN 240 TKCK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013591325.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013591325.1	1e-180	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC106299862
Swissprot	F4I8F9	1e-103	BH160_ARATH; Transcription factor bHLH160
TrEMBL	A0A3P6HDU7	1e-167	A0A3P6HDU7_BRAOL; Uncharacterized protein
STRING	Bo01532s010.1	1e-150	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10558	22	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G71200.1	1e-105	bHLH family protein

Publications ? help Back to Top
Yan J, et al. Arabidopsis Pollen Fertility Requires the Transcription Factors CITF1 and SPL7 That Regulate Copper Delivery to Anthers and Jasmonic Acid Synthesis. Plant Cell, 2017. 29(12): p. 3012-3029 [PMID:29114014]