PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013591677.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NF-YA
Protein Properties Length: 322aa    MW: 35482.8 Da    PI: 8.0915
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013591677.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.11.3e-32160215258
       CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     ep++VNaKQy++I++RR++Rakle+++kl +k+rkpylheSRh hAl+RpRgsgGrF
  XP_013591677.1 160 EPVFVNAKQYHAIMRRREQRAKLEAQNKL-IKARKPYLHESRHVHALKRPRGSGGRF 215
                     9****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.1E-38157218IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.704158218IPR001289Nuclear transcription factor Y subunit A
PfamPF020454.9E-27160215IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.2E-23161183IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860163183IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.2E-23192215IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MVELCRYSSC EDSLLGVMHQ MNKKDSTLPY LNTSISWGGV DARPEHMQTT KQISFQDLDS  60
PSSQSTCQSY TEVASSGDDN PSIQISFSTK SGSEETQQKG FATHPNSASM TGVPSIHFAP  120
TQIGGLLAPT YLPHAPTCHP QMVGMVPGRV PLPVEITETE PVFVNAKQYH AIMRRREQRA  180
KLEAQNKLIK ARKPYLHESR HVHALKRPRG SGGRFLNTKQ LLQESEQAAA KEQERDKLVQ  240
QGSKKANMSR LDAHMLQHNK DRGSTTSGSD ITSVSDGADI FGHAEFQLSG FPTTQTNRAM  300
LVHGQSNDMH GGGDLHHFSI HI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-19160220363NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:9662544}.
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013591677.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7876800.0KC787680.1 Brassica napus transcription factor subunit NF-YA3A.1 (NF-YA3A.1) gene, complete cds.
GenBankKC7876810.0KC787681.1 Brassica napus transcription factor subunit NF-YA3A.2 (NF-YA3A.2) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013591677.10.0PREDICTED: nuclear transcription factor Y subunit A-3-like isoform X2
SwissprotQ93ZH21e-175NFYA3_ARATH; Nuclear transcription factor Y subunit A-3
TrEMBLA0A078JS780.0A0A078JS78_BRANA; BnaCnng68450D protein (Fragment)
TrEMBLA0A0D3CX200.0A0A0D3CX20_BRAOL; Uncharacterized protein
STRINGBo6g090310.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.11e-164nuclear factor Y, subunit A3