PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013591680.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NF-YA
Protein Properties Length: 316aa    MW: 34874.9 Da    PI: 8.6891
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013591680.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.11.2e-32154209258
       CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     ep++VNaKQy++I++RR++Rakle+++kl +k+rkpylheSRh hAl+RpRgsgGrF
  XP_013591680.1 154 EPVFVNAKQYHAIMRRREQRAKLEAQNKL-IKARKPYLHESRHVHALKRPRGSGGRF 209
                     9****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.1E-38151212IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.704152212IPR001289Nuclear transcription factor Y subunit A
PfamPF020454.8E-27154209IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.2E-23155177IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860157177IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.2E-23186209IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MHQMNKKDST LPYLNTSISW GGVDARPEHM QTTKQISFQD LDSPSSQSTC QSYTEVASSG  60
DDNPSIQISF STKSGSEETQ QKGFATHPNS ASMTGVPSIH FAPTQANFSF HYADPQIGGL  120
LAPTYLPHAP TCHPQMVGMV PGRVPLPVEI TETEPVFVNA KQYHAIMRRR EQRAKLEAQN  180
KLIKARKPYL HESRHVHALK RPRGSGGRFL NTKQLLQESE QAAAKEQERD KLVQQGSKKA  240
NMSRLDAHML QHNKDRGSTT SGSDITSVSD GADIFGHAEF QLSGFPTTQT NRAMLVHGQS  300
NDMHGGGDLH HFSIHI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-19154214363NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:9662544}.
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013591680.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013591675.10.0PREDICTED: nuclear transcription factor Y subunit A-3-like isoform X1
SwissprotQ93ZH20.0NFYA3_ARATH; Nuclear transcription factor Y subunit A-3
TrEMBLW6D8Q60.0W6D8Q6_BRANA; Transcription factor subunit NF-YA3A.2
STRINGBo6g090310.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.11e-176nuclear factor Y, subunit A3