PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013591681.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NF-YA
Protein Properties Length: 305aa    MW: 33596.6 Da    PI: 9.064
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013591681.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.21.2e-32143198258
       CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     ep++VNaKQy++I++RR++Rakle+++kl +k+rkpylheSRh hAl+RpRgsgGrF
  XP_013591681.1 143 EPVFVNAKQYHAIMRRREQRAKLEAQNKL-IKARKPYLHESRHVHALKRPRGSGGRF 198
                     9****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.1E-38140201IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.704141201IPR001289Nuclear transcription factor Y subunit A
PfamPF020454.5E-27143198IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.2E-23144166IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860146166IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.2E-23175198IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MHQMNKKDST LPYLNTSISW GGVDARPEHM QTTKQISFQD LDSPSSQSTC QSYTEVASSG  60
DDNPSIQISF STKSGSEETQ QKGFATHPNS ASMTGVPSIH FAPTQIGGLL APTYLPHAPT  120
CHPQMVGMVP GRVPLPVEIT ETEPVFVNAK QYHAIMRRRE QRAKLEAQNK LIKARKPYLH  180
ESRHVHALKR PRGSGGRFLN TKQLLQESEQ AAAKEQERDK LVQQGSKKAN MSRLDAHMLQ  240
HNKDRGSTTS GSDITSVSDG ADIFGHAEFQ LSGFPTTQTN RAMLVHGQSN DMHGGGDLHH  300
FSIHI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A8e-20143203363NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:9662544}.
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013591681.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7876800.0KC787680.1 Brassica napus transcription factor subunit NF-YA3A.1 (NF-YA3A.1) gene, complete cds.
GenBankKC7876810.0KC787681.1 Brassica napus transcription factor subunit NF-YA3A.2 (NF-YA3A.2) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013591681.10.0PREDICTED: nuclear transcription factor Y subunit A-3-like isoform X4
SwissprotQ93ZH21e-175NFYA3_ARATH; Nuclear transcription factor Y subunit A-3
TrEMBLW6DGK30.0W6DGK3_BRANA; Transcription factor subunit NF-YA3A.1
STRINGBo6g090310.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.11e-164nuclear factor Y, subunit A3