PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013591763.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ARR-B
Protein Properties Length: 500aa    MW: 56828.5 Da    PI: 4.8745
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013591763.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like82.74e-26192246155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k+r++W+ eLH++Fv+av+q+G  +kA Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  XP_013591763.1 192 KARVVWSFELHQKFVNAVNQIGCDHKAGPKKILDLMNVPWLTRENVASHLQKYRL 246
                     68****************************************************8 PP
2Response_reg808.2e-27121181107
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl+vdD+p+ +++l+++l+k  y ev+++  ++eal+ll+e++  +D+++ D++mp+mdG++ll++   e  +lp+i+++  ge + + + ++ G
  XP_013591763.1  12 VLVVDDDPTWLKILEKMLKKCSY-EVTTCGLAREALRLLRERKdgYDIVISDVNMPDMDGFKLLEHVGLEL-DLPVIMMSVDGETKRVMKGVQHG 104
                     89*********************.***************999999**********************5543.7********************** PP

                     ESEEEESS--HHHH CS
    Response_reg  94 akdflsKpfdpeel 107
                     a d+l Kp+ ++el
  XP_013591763.1 105 ACDYLLKPIRMKEL 118
                     *********99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521722.13E-359131IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.4E-439133No hitNo description
SMARTSM004481.6E-3110122IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.63111126IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.9E-2412119IPR001789Signal transduction response regulator, receiver domain
CDDcd001564.42E-3113126No hitNo description
SuperFamilySSF466892.33E-16189250IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.9E-28189251IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-22192246IPR006447Myb domain, plants
PfamPF002492.0E-7194245IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MDKGFSPVGL RVLVVDDDPT WLKILEKMLK KCSYEVTTCG LAREALRLLR ERKDGYDIVI  60
SDVNMPDMDG FKLLEHVGLE LDLPVIMMSV DGETKRVMKG VQHGACDYLL KPIRMKELKI  120
IWQHVLRKKL QEVRDIEGCY EGGADWFTRN DETHYLGGGE DVSFGRKRKE FDFEKKLLLQ  180
DESDPSSSTS KKARVVWSFE LHQKFVNAVN QIGCDHKAGP KKILDLMNVP WLTRENVASH  240
LQKYRLYLSR LEKGKELKCY SGGVKNMDSP PKDAEFSSLI HKGETDPKQL ASSSVSDPSS  300
DVHMPPKAKK TRVEFDPPIS SSAFDSLIPW DDVIEPKPTI LYESSFLQQQ PLPSQSPYVA  360
NSAPTLMEDE MKPSYETCVN ADEFLMPQDK NSTVILQDLV DLSAPSVISS NVTNDTETML  420
RSLNWELPES HHSGFIDTDL DFSWIQNEHF LANTSGNFQN FQFQDYSCSP SLLSELPPHL  480
WFGNEPEEYT LMIDNGLFIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A5e-17188251163ARR10-B
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Detected in the whole plant. Predominantly expressed in roots and stems. {ECO:0000269|PubMed:15173562}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250, ECO:0000269|PubMed:12610214}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013591763.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013591763.10.0PREDICTED: two-component response regulator ARR11
SwissprotQ9FXD60.0ARR11_ARATH; Two-component response regulator ARR11
TrEMBLA0A0D3CYR00.0A0A0D3CYR0_BRAOL; Two-component response regulator
TrEMBLA0A3P6GWQ70.0A0A3P6GWQ7_BRAOL; Two-component response regulator
STRINGBo6g105120.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM80662740
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.10.0response regulator 11
Publications ? help Back to Top
  1. Zwack PJ, et al.
    Cytokinin Response Factor 6 Represses Cytokinin-Associated Genes during Oxidative Stress.
    Plant Physiol., 2016. 172(2): p. 1249-1258
    [PMID:27550996]
  2. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]