PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013591827.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

GRF

Protein Properties

Length: 380aa MW: 42352.6 Da PI: 6.7946

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013591827.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	75	7.9e-24	157	201	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+ep+rC+RtDGKkWRCsr +++++k+CErH h++r rsrk++e+ XP_013591827.1 157 DMEPWRCKRTDGKKWRCSRSAVPDQKYCERHTHKSRPRSRKHVES 201 79****************************************997 PP
2	QLQ	43.6	9.3e-16	90	124	2	36
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 aF+ +Q+q+L++Q +y y++a++PvPpeLl + + XP_013591827.1 90 AFSESQWQELERQRNIYEYIMASLPVPPELLTPFP 124 8******************************9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	7.0E-8	89	125	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	17.164	90	125	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	1.4E-10	90	122	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.08	157	201	IPR014977	WRC domain
Pfam	PF08879	2.0E-19	158	200	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence Send to blast
MMGTRAEHNK EDFVGCGFGF GVVEPSHREV MITSHHHHYP SYISPSSYSG SAGVTDPVFS 60 ASLAAADPFY TLSSSGEMGR SMSEKEGAAA FSESQWQELE RQRNIYEYIM ASLPVPPELL 120 TPFPKHPSHT YHQDVAMAKG GSLKLGITSN ASNNAADMEP WRCKRTDGKK WRCSRSAVPD 180 QKYCERHTHK SRPRSRKHVE SSQHHDTRTT KNASSHYAGT YPQLYGQPVN PFSNDHREFR 240 WFTKEDDAYA NLNPEVGPSR ELKRGFDYDL NFRQNEPLVD QSFGALEGLL SPNRQETRRF 300 FVEGDQDEAM GSSLTLSMAG GGMEEAERRR NQQHQWVSHE GPSWLCYTAP GGPLAEALFL 360 GASNDPSAST TTSSCSRSSG

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence Send to blast

MMGTRAEHNK EDFVGCGFGF GVVEPSHREV MITSHHHHYP SYISPSSYSG SAGVTDPVFS  60
ASLAAADPFY TLSSSGEMGR SMSEKEGAAA FSESQWQELE RQRNIYEYIM ASLPVPPELL  120
TPFPKHPSHT YHQDVAMAKG GSLKLGITSN ASNNAADMEP WRCKRTDGKK WRCSRSAVPD  180
QKYCERHTHK SRPRSRKHVE SSQHHDTRTT KNASSHYAGT YPQLYGQPVN PFSNDHREFR  240
WFTKEDDAYA NLNPEVGPSR ELKRGFDYDL NFRQNEPLVD QSFGALEGLL SPNRQETRRF  300
FVEGDQDEAM GSSLTLSMAG GGMEEAERRR NQQHQWVSHE GPSWLCYTAP GGPLAEALFL  360
GASNDPSAST TTSSCSRSSG

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Predominantly expressed in shoot tips and flowers. {ECO:0000269\|PubMed:12974814}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013591827.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269\|PubMed:15200956, ECO:0000269\|PubMed:19453503}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL109619	7e-66	AL109619.1 Arabidopsis thaliana DNA chromosome 4, BAC clone T19F6, partial sequence (ESSA project).
GenBank	AL161561	7e-66	AL161561.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 61.
GenBank	ATAC002343	7e-66	AC002343.1 Arabidopsis thaliana chromosome IV BAC T19F6 genomic sequence, complete sequence.
GenBank	CP002687	7e-66	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013591827.1	0.0	PREDICTED: growth-regulating factor 8 isoform X1
Swissprot	Q9SU44	1e-152	GRF8_ARATH; Growth-regulating factor 8
TrEMBL	A0A0D3A5V0	0.0	A0A0D3A5V0_BRAOL; Uncharacterized protein
STRING	Bo1g037590.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7836	26	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24150.1	1e-144	growth-regulating factor 8

Publications ? help Back to Top
Cao Y,Han Y,Jin Q,Lin Y,Cai Y Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa). Front Plant Sci, 2016. 7: p. 1750 [PMID:27933074]