PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013591928.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MIKC_MADS
Protein Properties Length: 219aa    MW: 25602.5 Da    PI: 9.6533
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013591928.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.61.6e-28959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien + rqvtfskRr+g++KKA+ELSvLCda+va i+fs++g+ly+++s
  XP_013591928.1  9 KRIENLTSRQVTFSKRRKGLFKKAHELSVLCDAQVAAIVFSQKGRLYDFAS 59
                    79***********************************************86 PP
2K-box45.72.7e-1683175999
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqk...kekelqeenkaLrkkle 99 
                      +++  ++l++e+  + ++ie L+r  R+l+G+d +s+s++eL+++ +++eksl+++Rs+K +l  ++ie+l++   keke+ +e  +Lr+++e
  XP_013591928.1  83 RKQQYVQELKNEMVIMADKIELLRRHSRRLMGQD-HSCSVEELNEIISKIEKSLTNVRSRKAKLNEDKIEKLKEetaKEKEVFNEGSRLRQMFE 175
                     4677789***************************.99*********************************999655599999999999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.824161IPR002100Transcription factor, MADS-box
SMARTSM004321.5E-39160IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-28323IPR002100Transcription factor, MADS-box
CDDcd002653.16E-38368No hitNo description
SuperFamilySSF554551.07E-29370IPR002100Transcription factor, MADS-box
PfamPF003191.1E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-283859IPR002100Transcription factor, MADS-box
PfamPF014862.4E-1585174IPR002487Transcription factor, K-box
PROSITE profilePS512979.80988180IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MVKGKIEIKR IENLTSRQVT FSKRRKGLFK KAHELSVLCD AQVAAIVFSQ KGRLYDFASS  60
DMQKMMERCE IHRNEYFGAE NLRKQQYVQE LKNEMVIMAD KIELLRRHSR RLMGQDHSCS  120
VEELNEIISK IEKSLTNVRS RKAKLNEDKI EKLKEETAKE KEVFNEGSRL RQMFEAQPLW  180
MQSRSLKSEK SAPSRDCGNM NISDVETDLF IGLHPESQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P4e-17166166Myocyte-specific enhancer factor 2B
1tqe_Q4e-17166166Myocyte-specific enhancer factor 2B
1tqe_R4e-17166166Myocyte-specific enhancer factor 2B
1tqe_S4e-17166166Myocyte-specific enhancer factor 2B
6c9l_A4e-17166166Myocyte-specific enhancer factor 2B
6c9l_B4e-17166166Myocyte-specific enhancer factor 2B
6c9l_C4e-17166166Myocyte-specific enhancer factor 2B
6c9l_D4e-17166166Myocyte-specific enhancer factor 2B
6c9l_E4e-17166166Myocyte-specific enhancer factor 2B
6c9l_F4e-17166166Myocyte-specific enhancer factor 2B
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the shoot apical meristem (SAM) during the vegetative phase and the floral transition. After floral transition, expressed in apical meristem (AM), inflorescence meristem (IM) and floral primordia. {ECO:0000269|PubMed:21609362}.
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL42 and AGL71 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1. {ECO:0000269|PubMed:21609362}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013591928.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893094e-63AC189309.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB034C07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013591928.11e-161PREDICTED: MADS-box transcription factor 23-like
SwissprotQ9FLH53e-70AGL72_ARATH; MADS-box protein AGL72
TrEMBLA0A3P6FL371e-155A0A3P6FL37_BRAOL; Uncharacterized protein
STRINGBo8g050720.11e-123(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM88051235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51860.24e-68MIKC_MADS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]