PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013592036.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

FAR1

Protein Properties

Length: 694aa MW: 80439 Da PI: 7.101

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013592036.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	82.7	6.1e-26	16	101	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +Y++YAk++GF + k +s++s+ ++e+++++f C ++g++++++++ ++ra+ ++gCka+++vk++ dgkw+v+++++eHnHel p XP_013592036.1 16 YYKDYAKSAGFGTAKLSSRRSRASKEFIDAKFSCIRYGTKQQSDDA----INPRASPKIGCKASMHVKRRPDGKWYVYSFVEEHNHELLP 101 8**************************************99887....9**********************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.3E-24	16	101	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.3E-25	219	310	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.868	497	533	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	7.8E-10	497	531	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.4E-8	508	535	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 694 aa Download sequence Send to blast
MLSQMEFETH EDAYTYYKDY AKSAGFGTAK LSSRRSRASK EFIDAKFSCI RYGTKQQSDD 60 AINPRASPKI GCKASMHVKR RPDGKWYVYS FVEEHNHELL PEQSHFFRSH RVESSDPRLR 120 RNKKSNNNPL ADCSKHLTAY HDLAFLDGYT RNNNNQRDRG RRLAIESLDA QILLEFLTRM 180 QEENHKFFYA VDFNEDNVLR NVFWVDAKGI DDYKSFNDVV SFDTSYVVSK FKLPLVVFVG 240 VNHHVQPVLL GCALVADESV YSYVWLMESW LMAMGGLMPR VMLTDQDDGI KAAVSAVLPE 300 TRHCYCLWYL LDRLPRNLDY WGMWQDAFLK KFFKCVYGSW SEEEFDRRWV KLIDKFHLRD 360 VQWMRCLYDE RSLWAPTFMR GVTFAGMSTR YRSESVNSMF DRYVQCETSL KDFLEGYGLM 420 LEDRYEEEAK ADFDAWHEAP ELKSPSPFEK QVLLVYTHVV FRRFQIEVLG AAACHLTKES 480 EGGTTYSVKD FEDDQKYLVE WDESKSDIYC SCRSFEYKGY LCRHAIVVLQ MSGVFTIPIN 540 YVLQRWTNAA RNRHQISGNL ELVQCNIRRF NDLCRRAVIL GEEGSLSQES YDVAMFAMKE 600 AFKLCAIKGQ GETIKEKRSS LNNTSKKAKH VTESGNVGEG SQEGFQHVVA GPRPFQAGLA 660 AQFHNTIPAV FQNVIPTEFH NIQATNMHQN NPPG

Sequence ? help Back to Top

Protein Sequence Length: 694 aa Download sequence Send to blast

MLSQMEFETH EDAYTYYKDY AKSAGFGTAK LSSRRSRASK EFIDAKFSCI RYGTKQQSDD  60
AINPRASPKI GCKASMHVKR RPDGKWYVYS FVEEHNHELL PEQSHFFRSH RVESSDPRLR  120
RNKKSNNNPL ADCSKHLTAY HDLAFLDGYT RNNNNQRDRG RRLAIESLDA QILLEFLTRM  180
QEENHKFFYA VDFNEDNVLR NVFWVDAKGI DDYKSFNDVV SFDTSYVVSK FKLPLVVFVG  240
VNHHVQPVLL GCALVADESV YSYVWLMESW LMAMGGLMPR VMLTDQDDGI KAAVSAVLPE  300
TRHCYCLWYL LDRLPRNLDY WGMWQDAFLK KFFKCVYGSW SEEEFDRRWV KLIDKFHLRD  360
VQWMRCLYDE RSLWAPTFMR GVTFAGMSTR YRSESVNSMF DRYVQCETSL KDFLEGYGLM  420
LEDRYEEEAK ADFDAWHEAP ELKSPSPFEK QVLLVYTHVV FRRFQIEVLG AAACHLTKES  480
EGGTTYSVKD FEDDQKYLVE WDESKSDIYC SCRSFEYKGY LCRHAIVVLQ MSGVFTIPIN  540
YVLQRWTNAA RNRHQISGNL ELVQCNIRRF NDLCRRAVIL GEEGSLSQES YDVAMFAMKE  600
AFKLCAIKGQ GETIKEKRSS LNNTSKKAKH VTESGNVGEG SQEGFQHVVA GPRPFQAGLA  660
AQFHNTIPAV FQNVIPTEFH NIQATNMHQN NPPG

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013592036.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013592036.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 4 isoform X2
Swissprot	Q6NQJ7	0.0	FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4
TrEMBL	A0A0D3D141	0.0	A0A0D3D141_BRAOL; Uncharacterized protein
STRING	Bo6g120360.1	0.0	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76320.1	0.0	FAR1-related sequence 4

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]