PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013592150.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

FAR1

Protein Properties

Length: 698aa MW: 78584.4 Da PI: 6.1877

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013592150.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	73.8	3.8e-23	96	180	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Yn+YA+++GF +r+++s ++++++e + ++C++eg+++ ++ + +++r+etrtgC+a++++++ + ++w+v++++l+HnH++ XP_013592150.1 96 YYNSYARDLGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKTLKEPN----STRRKETRTGCQAMIRLRLIELDRWKVDEVKLDHNHSFD 180 9**************************************98777....89999*****************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.8E-20	96	180	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.3E-24	299	392	IPR018289	MULE transposase domain
PROSITE profile	PS50966	8.877	580	619	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.0E-6	582	618	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.9E-5	594	621	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 698 aa Download sequence Send to blast
MMGGNNVYSP PDQSLSPNSN LCITIEEVSQ SSEQLVVDGD DDLPIVGDNP ADDLHDCDGL 60 LDEFPAQSNG SEKCSLASPP PATGMEFDSY DDAYSYYNSY ARDLGFAIRV KSSWTKRNSK 120 EKRGAVLCCN CEGFKTLKEP NSTRRKETRT GCQAMIRLRL IELDRWKVDE VKLDHNHSFD 180 PERAHNSKSH KKACGGGDGG AAKRKHEPPL DVQVRTIKLY RTNAIDSSGE TSDDHLHSSK 240 RLDLRGGGGF RVLQDFFFQS QLTNPNFFHS VDLGDDGGLR NVFWIESRAR AAYSHFSDVV 300 VFDTTCLSNA YELPLVAFVG INHHGDPILL GCGLVADQTP ETYVWLFRAW LTCVSGCPPL 360 TFVTEHCKSI QTAVSEVFPR AHHRLSLSHV LQCIVGVQDS ESFRMALNSV VYGFLKVEEF 420 EVAWEEMIIR FGLTNDETIR GLFQDREQWA PVYLKDTFLA GALTFRLGNA AAPFIFSSYV 480 HQHTSLREFL EGYESFLDKK YTNEALCDLE SSKSIPELKT THPYESQMAK VLTKEIFTRF 540 QEEVVATSSC SGVTQVHSSN GSASSSYVVK EREGEKVRDF EVVYETNAVA GVRCFCVCGG 600 FSFNGYQCRH VLLLLSHKGL EEIPSQHILQ RWRKDVKRLY IADFGSGCVD VMNPVQWYEH 660 LHRRAMQVVE QGMRSKEHCR VAWEAFKECV NRVTEKSS

Sequence ? help Back to Top

Protein Sequence Length: 698 aa Download sequence Send to blast

MMGGNNVYSP PDQSLSPNSN LCITIEEVSQ SSEQLVVDGD DDLPIVGDNP ADDLHDCDGL  60
LDEFPAQSNG SEKCSLASPP PATGMEFDSY DDAYSYYNSY ARDLGFAIRV KSSWTKRNSK  120
EKRGAVLCCN CEGFKTLKEP NSTRRKETRT GCQAMIRLRL IELDRWKVDE VKLDHNHSFD  180
PERAHNSKSH KKACGGGDGG AAKRKHEPPL DVQVRTIKLY RTNAIDSSGE TSDDHLHSSK  240
RLDLRGGGGF RVLQDFFFQS QLTNPNFFHS VDLGDDGGLR NVFWIESRAR AAYSHFSDVV  300
VFDTTCLSNA YELPLVAFVG INHHGDPILL GCGLVADQTP ETYVWLFRAW LTCVSGCPPL  360
TFVTEHCKSI QTAVSEVFPR AHHRLSLSHV LQCIVGVQDS ESFRMALNSV VYGFLKVEEF  420
EVAWEEMIIR FGLTNDETIR GLFQDREQWA PVYLKDTFLA GALTFRLGNA AAPFIFSSYV  480
HQHTSLREFL EGYESFLDKK YTNEALCDLE SSKSIPELKT THPYESQMAK VLTKEIFTRF  540
QEEVVATSSC SGVTQVHSSN GSASSSYVVK EREGEKVRDF EVVYETNAVA GVRCFCVCGG  600
FSFNGYQCRH VLLLLSHKGL EEIPSQHILQ RWRKDVKRLY IADFGSGCVD VMNPVQWYEH  660
LHRRAMQVVE QGMRSKEHCR VAWEAFKECV NRVTEKSS

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013592150.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC232471	0.0	AC232471.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB026K21, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013592150.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 8
Swissprot	Q9S793	0.0	FRS8_ARATH; Protein FAR1-RELATED SEQUENCE 8
TrEMBL	A0A0D3CVJ4	0.0	A0A0D3CVJ4_BRAOL; Uncharacterized protein
STRING	Bo6g080100.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14233	20	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80010.1	0.0	FAR1-related sequence 8

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]