PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013592252.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 257aa    MW: 27690.8 Da    PI: 5.1854
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013592252.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.00018138159223
                     EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                     +C+ Cg+ F ++     H+r+H
  XP_013592252.1 138 VCNVCGRAFHSWKAVFGHLRSH 159
                     6*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.663137164IPR007087Zinc finger, C2H2
PROSITE patternPS000280139159IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MTNPEKMKVD GDTEKEREDS SSDEQWSDEE SAMREIVLGL PALSISSATF GVSIADDEEE  60
EARLNEQAVV AAELVIAAAE EAVMKEKSDG KKKVRRQRKT MKLNNDDEAG GSSKGGEAAK  120
KPRKKTSEFT NLPRGPPVCN VCGRAFHSWK AVFGHLRSHK DRSYRGFLPP PRFAAPIRGV  180
MIPGPNSAFV RVVARGGSSG GGGGASGGEG GRGVGIVMDV DRVEEEKQEV TESGSVAKFD  240
LNKSPPKDDD EEEEKTK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013592252.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013592252.10.0PREDICTED: zinc finger protein ZAT9
RefseqXP_013649612.20.0uncharacterized protein LOC106354258
TrEMBLA0A0D3A1Q60.0A0A0D3A1Q6_BRAOL; Uncharacterized protein
TrEMBLA0A3P6ESB10.0A0A3P6ESB1_BRAOL; Uncharacterized protein
STRINGBo1g006320.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58752241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35610.16e-40C2H2 family protein