PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013592301.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 782aa    MW: 85891 Da    PI: 6.8148
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013592301.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox611.8e-19100155156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t++q++ Le++F+++ +p++++r +L+++l+L+ rqVk+WFqNrR+++k
  XP_013592301.1 100 KKRYHRHTAKQIQDLESVFKECAHPDEKQRLDLSRRLNLDPRQVKFWFQNRRTQMK 155
                     688999***********************************************999 PP
2START1847.9e-583005192206
                     HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 
                     la+ a++elvk+a   ep+Wv+ss    e++n++e+ ++f++  +     + +ea++++g+v+ ++  lve+l+d+  +W e+++    + +t+e
  XP_013592301.1 300 LALGAMEELVKMARRHEPLWVRSSetgfEMLNKEEYDTSFSRVVGpkqdgFVSEASKETGNVIINSLALVETLMDSE-RWAEMFPsmisRTSTTE 393
                     67889***********************88888888888866544888999**************************.*******9999****** PP

                     EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE CS
           START  84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvd 171
                      issg      gal+lm aelq+lsplvp R + f+R+++q+ +g+w++vdvS+ds ++ + sss+ R   lpSg+l+++++ng+skvtw+eh++
  XP_013592301.1 394 IISSGmggtrnGALHLMHAELQLLSPLVPvRQVSFLRFCKQHAEGVWAVVDVSIDSIREGS-SSSCRR---LPSGCLVQDMANGYSKVTWIEHTE 484
                     ************************************************************9.777766...************************ PP

                     --SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 172 lkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     ++++ +h l+r+l++ gla+ga++w+a+lqrqce+
  XP_013592301.1 485 YDENRIHRLYRPLLSCGLAFGAQRWMAALQRQCEC 519
                     *********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.0E-2186157IPR009057Homeodomain-like
SuperFamilySSF466892.76E-1988157IPR009057Homeodomain-like
PROSITE profilePS5007117.21697157IPR001356Homeobox domain
SMARTSM003891.5E-1798161IPR001356Homeobox domain
CDDcd000861.00E-16100157No hitNo description
PfamPF000464.5E-17100155IPR001356Homeobox domain
PROSITE patternPS000270132155IPR017970Homeobox, conserved site
PROSITE profilePS5084839.624290522IPR002913START domain
SuperFamilySSF559616.04E-30293519No hitNo description
CDDcd088751.08E-111294518No hitNo description
SMARTSM002341.0E-44299519IPR002913START domain
PfamPF018522.1E-49301519IPR002913START domain
SuperFamilySSF559611.26E-18549774No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048497Biological Processmaintenance of floral organ identity
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 782 aa     Download sequence    Send to blast
MNFNGYLGDG SSGDRISDVP YSDHVSFPAA ATMPHSRPFS SNGLSLGLQT NGVNGETFET  60
NVTRNKSRGG EDAESRSESD NAEAASGDDL ETGDKPPRKK KRYHRHTAKQ IQDLESVFKE  120
CAHPDEKQRL DLSRRLNLDP RQVKFWFQNR RTQMKTQIER HENALLRQEN DKLRAENMSV  180
REAMRNPMCS NCGGPAVPGE VSMEEQHLRI ENSRLKDELD RVCALTGKFF GRSPSGSHHV  240
PDSSLLLGVG VGSGGGFSLS SPSLPQASPR FEISNDTGLA TVNRQPPVSD FDQRSRYLDL  300
ALGAMEELVK MARRHEPLWV RSSETGFEML NKEEYDTSFS RVVGPKQDGF VSEASKETGN  360
VIINSLALVE TLMDSERWAE MFPSMISRTS TTEIISSGMG GTRNGALHLM HAELQLLSPL  420
VPVRQVSFLR FCKQHAEGVW AVVDVSIDSI REGSSSSCRR LPSGCLVQDM ANGYSKVTWI  480
EHTEYDENRI HRLYRPLLSC GLAFGAQRWM AALQRQCECL TILMSSTVSP SRSPTPISCN  540
GRKSMLKLAR RMTDNFCGGV CASSLQKWSK LNVGNVDEDV RIMTRKSVND PGEPPGIVLN  600
AATSVWMPVS PKRLFDFLGN ERLRSEWDIL SNGGPMQEMA HIAKGHDHSN SISLLRATAI  660
NANQSSMLIL QETSIDAAGA VVVYAPVDIP AMQTVMNGGD SAYVALLPSG FAILPNAPQR  720
LEERNGNGGC MAEGGSLLTV AFQILVNSLP TAKLTVESVE TVNNLISCTI QKIKAALHCD  780
SN
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in trichomes forming at the base of young leaves, in endodermal cell lines around emergent lateral roots and in the epidermal layer of the stamen filament. {ECO:0000269|PubMed:16778018}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00418DAPTransfer from AT3G61150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013592301.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ1824900.0DQ182490.1 Brassica napus baby boom interacting protein 2 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013592301.10.0PREDICTED: homeobox-leucine zipper protein HDG1
SwissprotQ9M2E80.0HDG1_ARATH; Homeobox-leucine zipper protein HDG1
TrEMBLA0A0D3CV310.0A0A0D3CV31_BRAOL; Uncharacterized protein
STRINGBo6g077480.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112827105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.10.0homeodomain GLABROUS 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Horstman A, et al.
    AIL and HDG proteins act antagonistically to control cell proliferation.
    Development, 2015. 142(3): p. 454-64
    [PMID:25564655]