PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013592349.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CAMTA
Protein Properties Length: 986aa    MW: 109373 Da    PI: 6.5588
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013592349.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-11681.5e-52111272117
            CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 
                     ++e ++rwlk+ e++ iL n+e+++lt +++++p+sgs++Lyn++++++frkDG++wk+kkdg+++ E+he+LKvg+ve+l+cyYah+e++p+fq
  XP_013592349.1  11 YQEaHTRWLKPPEVHFILLNHERYRLTDKPPHKPTSGSVLLYNKRVLKFFRKDGHQWKRKKDGRAIAEAHERLKVGNVEALQCYYAHGEHEPSFQ 105
                     566699***************************************************************************************** PP

            CG-1  96 rrcywlLeeelekivlvhylev 117
                     rr+yw+L+ e+e+i lvhy++v
  XP_013592349.1 106 RRIYWILDPEYEHIALVHYRDV 127
                     ********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143772.8187133IPR005559CG-1 DNA-binding domain
SMARTSM010767.1E-7210128IPR005559CG-1 DNA-binding domain
PfamPF038591.3E-4413127IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.101.5E-8446538IPR013783Immunoglobulin-like fold
PfamPF018332.0E-9456536IPR002909IPT domain
CDDcd001025.92E-7456538No hitNo description
SuperFamilySSF812961.39E-17456537IPR014756Immunoglobulin E-set
Gene3DG3DSA:1.25.40.204.0E-14625722IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029714.955627719IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484034.66E-14629721IPR020683Ankyrin repeat-containing domain
CDDcd002041.19E-11632719No hitNo description
PfamPF127966.0E-7648720IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0054660689IPR002110Ankyrin repeat
PROSITE profilePS5008810.766660692IPR002110Ankyrin repeat
SMARTSM002484000699728IPR002110Ankyrin repeat
SMARTSM0001521771793IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.657772800IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525401.86E-7772879IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000156.1827849IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.199828857IPR000048IQ motif, EF-hand binding site
PfamPF006120.012829848IPR000048IQ motif, EF-hand binding site
SMARTSM000158.3E-4850872IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.865851875IPR000048IQ motif, EF-hand binding site
PfamPF006122.1E-4853872IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 986 aa     Download sequence    Send to blast
MQSEYDVSTL YQEAHTRWLK PPEVHFILLN HERYRLTDKP PHKPTSGSVL LYNKRVLKFF  60
RKDGHQWKRK KDGRAIAEAH ERLKVGNVEA LQCYYAHGEH EPSFQRRIYW ILDPEYEHIA  120
LVHYRDVSDG KEGKHSSGTV VQFSPNPSNL FSSPVSIGTQ NASYSHLIGD STDIHQHHSS  180
TSPGVNSDVV FKSNGVETTP KGSGSSYEFE TREALKRLEE QLSLGDDNNV VHNESLDGLQ  240
FLDFSTDVDH LVPPLATVHQ RPESSSKLGR CYGGYVGGAQ YNVSTVGSPL HSLNSLLSLE  300
CTEEINAQPA AGHQRAENNR LGRCYGGYIG AEYHSNNLML VKNDSGGSGG SGDQKAESWK  360
DVLEACEASI ALNSEGSTPS SAKGLLTGMQ EDSNLSYSNQ ADQATLLLPQ ELASSFELPT  420
CYSELGALAT NANNSRMELP FEQVMNQTVA YKQKFTIQDI SPEWGYANET TKVIIIGSFL  480
CDTTWSCMFG STEVPFEIIK EGVIRCQAPP CGPGKVNLCI TSGDGLSCSQ IKEFEYREKP  540
DDTSCPWSSR DELLLLVRLV QTLVSDSKSN LEPWSHILET ILDGTATSSS TVDWLLQELL  600
KDKLDVWLSS RPRQDEDQTS CCSLSKQEQG IIHMVAGLGF EWALHPILAR GVGVDFRDIN  660
GWSALHWAAR FGSEKLVAAL IASGASAGAV TDPTAQDPAG KTAASIAASN GHKGLAGYLS  720
EVALTDHLSS LTLEETESSK DTAHLQAEMT LNSISERSPH SLKDTLAAVR NAAQAVARIQ  780
AAFRAHSFRK RQQREAAMAA YFQEYGIYAD IKGVSAMSKL ASGNVKSYHS AALSIQKNYR  840
RYKRRKEFLS LRQKVVKIQA HVRGYQIRKH YKVICWAVGI LDKVVLRWRR KGAGLRGFRQ  900
DVEDSEEEDI LKVFRKQKVD AAVNEAFSRV LSMANSPEAR QQYHRVLKRY CQTKAELGKT  960
DIRRGGDEDE DLFDLADMED DSLFAL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1839846RRYKRRKE
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:12218065}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013592349.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013592349.10.0PREDICTED: LOW QUALITY PROTEIN: calmodulin-binding transcription activator 4-like
SwissprotQ9FYG20.0CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLA0A0D3CYL90.0A0A0D3CYL9_BRAOL; Uncharacterized protein
STRINGBo6g103720.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64762642
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.10.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]