PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013593013.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 239aa    MW: 26117.4 Da    PI: 4.5198
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013593013.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.62.9e-051872231354
                     HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     R+++++ +  Lr+++P       + ++ a++L +Av+Y+ksL
  XP_013593013.1 187 RRKMKKMMGVLRRIVPGG-----EEMNTASVLDEAVQYLKSL 223
                     899*************95.....69***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.223174223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.007181229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.1E-7187234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.84E-8187235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.33E-5187228No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MQNNQYPYFS DVMGDGNMNS VPSYASASSF DALSPPCAKL PFHGVELQPS SVCPNNFVVF  60
DQTYDRSQVM YHPELTPRLV NSGLASSFHN EYVAGSYGNY GRQEVSSSSS HQEDPNEIDA  120
LLSTDEDGDE SEDGCDSEEV STTARESLRE YGNTSAESSC SSYGYSSRRK QSVSGSASSS  180
NNDGKGRRKM KKMMGVLRRI VPGGEEMNTA SVLDEAVQYL KSLKLEAQKL GVEHFSNQS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167190RRKQSVSGSASSSNNDGKGRRKMK
2185193GRRKMKKMM
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013593013.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013593013.11e-177PREDICTED: transcription factor bHLH144-like
SwissprotQ9ASX91e-104BH144_ARATH; Transcription factor bHLH144
TrEMBLA0A0D3D5V81e-175A0A0D3D5V8_BRAOL; Uncharacterized protein
STRINGBo7g044860.11e-176(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61951626
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29950.25e-89bHLH family protein
Publications ? help Back to Top
  1. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]
  2. Cai Q, et al.
    The SAC51 Family Plays a Central Role in Thermospermine Responses in Arabidopsis.
    Plant Cell Physiol., 2016. 57(8): p. 1583-92
    [PMID:27388339]
  3. Yamamoto M,Takahashi T
    Thermospermine enhances translation of SAC51 and SACL1 in Arabidopsis.
    Plant Signal Behav, 2017. 12(1): p. e1276685
    [PMID:28045577]