PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013593660.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 331aa MW: 36261.4 Da PI: 5.9482

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013593660.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.1	4.1e-10	165	212	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + ++ Ka +L + ++Y++sLq XP_013593660.1 165 SHSLAERARREKISERMTLLQDLVPGC----NRITGKAVMLDEIINYVQSLQ 212 8************************....9*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.01E-16	159	230	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.13E-11	159	216	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.3E-17	161	229	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.542	161	211	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.8E-7	165	212	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.6E-10	167	217	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MENQSIKYVA LGQSDPFGNN VNEGTIGDLL VGRFCNPQET ISPYPAGNLR FPPYPGQFGS 60 QDSNKSSLLD PDLDRVQTAK PNSRKRKLIP SASASGGNGK ESPASSSLTA SNSKVSGEIV 120 GSKRSKQDEA GSSKKDDGNK DDAKPPEPPK DYIHVRARRG QATDSHSLAE RARREKISER 180 MTLLQDLVPG CNRITGKAVM LDEIINYVQS LQRQVEFLSM KLATINPRLE FNPSAALSTE 240 MVQPGEALTQ SLYSMACSEQ RLPSAYYSLA KNMPRFSDTQ FPSSDAFVQA ETQGFWENDL 300 QSIVQMGFGD VQQQSNNNSC SEPTLQMKLE P

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00660	PBM	Transfer from Pp3c6_9520	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013593660.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY065441	1e-167	AY065441.1 Arabidopsis thaliana putative DNA-binding protein (At3g23690) mRNA, complete cds.
GenBank	AY096536	1e-167	AY096536.1 Arabidopsis thaliana putative DNA-binding protein (At3g23690) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013593660.1	0.0	PREDICTED: transcription factor bHLH77-like
Swissprot	Q9LK48	1e-177	BH077_ARATH; Transcription factor bHLH77
TrEMBL	A0A0D3D5D3	0.0	A0A0D3D5D3_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6E9G2	0.0	A0A3P6E9G2_BRAOL; Uncharacterized protein
STRING	Bo7g039150.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7406	20	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23690.1	1e-152	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]