PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013593880.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Dof

Protein Properties

Length: 219aa MW: 23219.8 Da PI: 9.2568

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013593880.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	119.1	1.7e-37	24	83	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++l+cprC+stntkfCyynny+ sqPr+fCkaCrryWt+GG+lr++PvGg +rk+ k+s XP_013593880.1 24 PDQLPCPRCESTNTKFCYYNNYNFSQPRHFCKACRRYWTHGGTLRDIPVGGVSRKSSKRS 83 56899**************************************************98875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-31	2	75	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	7.0E-33	26	81	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.584	27	81	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	29	65	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0000976	Molecular Function	transcription regulatory region sequence-specific DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MPSDVNESRR LTKIPHGGAA ADQPDQLPCP RCESTNTKFC YYNNYNFSQP RHFCKACRRY 60 WTHGGTLRDI PVGGVSRKSS KRSRTCSSVP VSTAVGSREF PLQATPVLFP PSSNDGGVTA 120 AKGTASSAFG GFTSLLSYNA AASRNGPGGR FNGLEGFGLG LGQGSYFDNV RFGQGITVWP 180 FSTGATDATS AVTSHVGPIP ATWQFEGPES KVGFVSGDY

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00593	DAP	Transfer from AT5G66940	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013593880.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013593880.1	1e-161	PREDICTED: dof zinc finger protein DOF5.8
Refseq	XP_013687059.1	1e-161	dof zinc finger protein DOF5.8
Swissprot	Q9FGD6	1e-115	DOF58_ARATH; Dof zinc finger protein DOF5.8
TrEMBL	A0A078FEI8	1e-159	A0A078FEI8_BRANA; BnaC07g16430D protein
TrEMBL	A0A0D3D8A9	1e-159	A0A0D3D8A9_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6EJ53	1e-159	A0A3P6EJ53_BRAOL; Uncharacterized protein
STRING	Bo7g064260.1	1e-160	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2286	28	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66940.1	3e-99	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]