PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013594366.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 252aa MW: 27960.4 Da PI: 6.6367

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013594366.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	21.8	3.5e-07	43	91	2	54
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + + erE+ RRd++++ +eL + l ++ +K +Ka+iL +v+ +k+L XP_013594366.1 43 KIQKAEREKIRRDKLKKHVFELGDALDPN----RPKSDKASILIDTVQILKDL 91 567889******************997....79***********99988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	4.87E-6	40	95	No hit	No description
SuperFamily	SSF47459	3.27E-12	41	111	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.954	41	91	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.1E-10	41	114	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.4E-5	43	91	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.7E-5	47	97	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MEQLKKLKTS SDDESSTASS SWGHNIRPEK MVDGKEEPVS SRKIQKAERE KIRRDKLKKH 60 VFELGDALDP NRPKSDKASI LIDTVQILKD LMTQVDRLKA EYVTLSQESR ELNQDKSELR 120 EENSSLKSDI EILSAQCQHR VMVPWIPHYA YPLPVVAITQ GQVSTLPSLL NGTQTPSPLP 180 NPSTTFMPYL AASLGPKMER KDDVGLELEL KIHASSSAHD ASGKEEKGNS TVTASSSNSY 240 YSSSHAVQDC SP

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed consitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013594366.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189569	2e-46	AC189569.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH009I12, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013594366.1	0.0	PREDICTED: transcription factor bHLH11-like isoform X2
Swissprot	Q8W2F2	6e-75	BH011_ARATH; Transcription factor bHLH11
TrEMBL	A0A078JS07	1e-174	A0A078JS07_BRANA; BnaC01g40740D protein
STRING	Bo1g005970.1	1e-162	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36060.1	2e-73	bHLH family protein

Publications ? help Back to Top
Kawabe A,Hansson B,Forrest A,Hagenblad J,Charlesworth D Comparative gene mapping in Arabidopsis lyrata chromosomes 6 and 7 and A. thaliana chromosome IV: evolutionary history, rearrangements and local recombination rates. Genet. Res., 2006. 88(1): p. 45-56 [PMID:17014743] Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786] Tanabe N, et al. The basic helix-loop-helix transcription factor, bHLH11 functions in the iron-uptake system in Arabidopsis thaliana. J. Plant Res., 2019. 132(1): p. 93-105 [PMID:30417276]