PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013594413.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 293aa MW: 33382 Da PI: 4.7606

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013594413.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.6	1.5e-05	191	228	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L A+eYIk L XP_013594413.1 191 RKEKLGDRITALQQLVSPF-----GKTDTASVLHDAIEYIKFL 228 677888999*****998.....8**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.852	179	228	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.39E-6	189	232	No hit	No description
SuperFamily	SSF47459	2.22E-10	189	236	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.4E-9	193	233	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MTEEFETVGI RTGPWWSFPN GMFSGLSQPH STEISIDIGG FEWQNIDNID AETYDKSYTS 60 TLSSNTNLDS TSQVNAWNQY NHREEERFDP ISSFLEGLFD NSELSVPSVK RELLESFHFF 120 EDVFLNESRT VSVFDHEIGD KHEEENQAWK SLITCKRTSE KTKDLEDIES LPPLKRPRLE 180 TPTQFPSFKV RKEKLGDRIT ALQQLVSPFG KTDTASVLHD AIEYIKFLRE QITVSSNPQL 240 NSKGSGEQKQ VLKSYNGTHA EDSSPRQDLR SRGLCLMPIS STFSTSPLHF GLI

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Mature root endodermis. {ECO:0000269\|PubMed:16581911}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013594413.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013594413.1	0.0	PREDICTED: transcription factor bHLH103 isoform X2
Swissprot	Q8VZ22	1e-134	BH103_ARATH; Transcription factor bHLH103
TrEMBL	A0A0D3A4U0	0.0	A0A0D3A4U0_BRAOL; Uncharacterized protein
STRING	Bo1g024090.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14712	14	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21340.1	1e-127	bHLH family protein

Publications ? help Back to Top
Kawabe A,Hansson B,Forrest A,Hagenblad J,Charlesworth D Comparative gene mapping in Arabidopsis lyrata chromosomes 6 and 7 and A. thaliana chromosome IV: evolutionary history, rearrangements and local recombination rates. Genet. Res., 2006. 88(1): p. 45-56 [PMID:17014743]