PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013594517.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Dof
Protein Properties Length: 244aa    MW: 27639.6 Da    PI: 8.1465
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013594517.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof106.31.6e-332177561
          zf-Dof  5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                     + cprC s+ntkfCyynnys+sqPry C++Crr+Wt+GGalr++P+Gg +rk k++
  XP_013594517.1 21 PRVCPRCSSDNTKFCYYNNYSVSQPRYNCRNCRRFWTHGGALRDIPIGGRARKIKRT 77
                    678**************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-211676IPR003851Zinc finger, Dof-type
PROSITE profilePS5088426.6642276IPR003851Zinc finger, Dof-type
PfamPF027012.1E-302276IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102460IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010154Biological Processfruit development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000032Biological Processregulation of secondary shoot formation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MDKLSVIVKG DHQVNEEKPP PRVCPRCSSD NTKFCYYNNY SVSQPRYNCR NCRRFWTHGG  60
ALRDIPIGGR ARKIKRTSID QPSVSQVLSV VQQVNHHQPF LHAQETNEFL GTFGGAVGNH  120
FSSSPEIHGE MVLPIQSIPP MDRFDLFDVT FNQGYYGVGF NDLVGNPLMN QSIGGHVDNY  180
NSYRMNQEDP NNRNQSFNNS INMNHNTSTS GSRGYPGTDH MTDNNKDRNK CVFSSSYHLE  240
KYGP
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013594517.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013594517.10.0PREDICTED: dof zinc finger protein DOF4.4-like
RefseqXP_013681996.10.0dof zinc finger protein DOF4.4
RefseqXP_022569364.10.0dof zinc finger protein DOF4.4-like
SwissprotQ9SUA93e-73DOF44_ARATH; Dof zinc finger protein DOF4.4
TrEMBLA0A078JWI50.0A0A078JWI5_BRANA; BnaUnng03510D protein
TrEMBLA0A0D3A4Q50.0A0A0D3A4Q5_BRAOL; Uncharacterized protein
TrEMBLA0A3P6EV000.0A0A3P6EV00_BRAOL; Uncharacterized protein
STRINGBo1g023740.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16021789
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21050.13e-70Dof-type zinc finger domain-containing protein