PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013594895.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 236aa MW: 26514.3 Da PI: 6.8514

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013594895.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	18.8	3e-06	61	114	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +++ +++Er RR r+ ++ +L +llP s+ ++kK +i ++v YI +L XP_013594895.1 61 KKQERSANERLRRLRLHASYLTLGTLLPDHSSSSKKKWCAPSIMDRVVTYIPKL 114 5778899********************87888889************887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	8.77E-9	55	127	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.64E-4	58	119	No hit	No description
PROSITE profile	PS50888	11.096	60	114	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.5E-7	60	134	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0013	66	120	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MDNHQTLASS LLDDLLHIPA ETIGASGEKN DTCLAQSESK GKEVVVVLHD QDAHGPSSVA 60 KKQERSANER LRRLRLHASY LTLGTLLPDH SSSSKKKWCA PSIMDRVVTY IPKLHNEVEE 120 LTLRKQKLVE AVQSKRFREL ERQDPHIRAI SVLELEGSGD EVVVQISMKR VKADEFSNLL 180 HVMEMQGFCI LSASTSLVCR DQKVVCYNFH VKIDEKPSEG EDYITVLKNN IISTLS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013594895.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013594895.1	1e-174	PREDICTED: uncharacterized protein LOC106303079
Swissprot	F4I8F9	5e-91	BH160_ARATH; Transcription factor bHLH160
TrEMBL	A0A3N6QF87	1e-172	A0A3N6QF87_BRACR; Uncharacterized protein
STRING	Bo7g080650.1	1e-155	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10558	22	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G71200.1	2e-93	bHLH family protein

Publications ? help Back to Top
Yan J, et al. Arabidopsis Pollen Fertility Requires the Transcription Factors CITF1 and SPL7 That Regulate Copper Delivery to Anthers and Jasmonic Acid Synthesis. Plant Cell, 2017. 29(12): p. 3012-3029 [PMID:29114014]