PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013595089.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Dof
Protein Properties Length: 145aa    MW: 16488.7 Da    PI: 10.5098
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013595089.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof64.61.7e-201165460
          zf-Dof  4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60
                      + cprC+s+ntkfCy  n   sqPry C+ Crr W +  alrn+P+Gg r ++ k
  XP_013595089.1 11 PRRMCPRCHSHNTKFCYIVN--SSQPRYTCRHCRRSWIHRWALRNIPMGGERGRKTK 65
                    5678*************987..68*************************98754443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-12866IPR003851Zinc finger, Dof-type
PfamPF027011.4E-181365IPR003851Zinc finger, Dof-type
PROSITE profilePS5088417.9331365IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MDKLVSVKKP PRRMCPRCHS HNTKFCYIVN SSQPRYTCRH CRRSWIHRWA LRNIPMGGER  60
GRKTKRPKID QPSVSQVNSV ENHFGSLSVV LALPAPNAPP MDRMEVSDGS FYQGYHDVGS  120
NGANQENPNK NLNASTDQMI KNNNV
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013595089.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1728780.0AC172878.1 Brassica rapa subsp. oleifera cultivar Inbred line 'Chiifu' clone KBrH069E01, complete sequence.
GenBankAC2410200.0AC241020.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB039B11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013595089.11e-106PREDICTED: dof zinc finger protein DOF4.4-like
SwissprotQ9SUA99e-30DOF44_ARATH; Dof zinc finger protein DOF4.4
TrEMBLA0A0D3DF791e-105A0A0D3DF79_BRAOL; Uncharacterized protein
STRINGBo7g107270.11e-105(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2638623
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21050.11e-30Dof-type zinc finger domain-containing protein