PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013595095.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 201aa    MW: 22261.8 Da    PI: 4.2103
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013595095.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26073.93.1e-236107297
          DUF260   2 CaaCkvlrr.kCa....kdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     C aC + ++  C+    + Cv+apyfp+++p kf  vh +FG++nv+k+l++l ++ +re a+++l+yeAe+r++dP++G +   + +++ l++l
  XP_013595095.1   6 CVACNFTNNgPCTlgngNACVMAPYFPSTEPDKFDRVHIVFGVENVCKILSRLeEPWQREYAANALCYEAEVRIHDPIHGYLVPQMVYNNILNNL 100
                     99***99987898554467**********************************55667************************9999999999999 PP

          DUF260  91 kaelall 97 
                     k e++++
  XP_013595095.1 101 KREIDSA 107
                     9998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031955.6E-226106IPR004883Lateral organ boundaries, LOB
PROSITE profilePS5089115.1519111IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MDLPNCVACN FTNNGPCTLG NGNACVMAPY FPSTEPDKFD RVHIVFGVEN VCKILSRLEE  60
PWQREYAANA LCYEAEVRIH DPIHGYLVPQ MVYNNILNNL KREIDSAINE LSITMANVPQ  120
YSNLPIPSDF TEPSLFALIN EMLELNEDQK NQLRGLPDVD ARRNVDEIVG MRENDQGDVH  180
GADGASTSSG PSSGPPNQNQ P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-21611112111LOB family transfactor Ramosa2.1
5ly0_B4e-21611112111LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013595095.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013595095.11e-148PREDICTED: LOB domain-containing protein 32-like
TrEMBLA0A0D3DFG21e-147A0A0D3DFG2_BRAOL; Uncharacterized protein
STRINGBo7g108100.11e-148(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45251455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35900.14e-37LOB domain-containing protein 35