PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013595096.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 116aa    MW: 13408.2 Da    PI: 7.5935
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013595096.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260668.9e-211821898
          DUF260 18 lapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98
                    +apy+p+++p kf  vhk+FG++nv k+l++l+e+   e a+++l+yeAear++dP++G vg  + +++ l++lk e++++ 
  XP_013595096.1  1 MAPYLPSKEPDKFDRVHKVFGVENVYKILSRLEESWqSEYAVNALCYEAEARIHDPIHGYVGPQMIYNNILNNLKREIDSAI 82
                    59******************************88763799***********************************9998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031952.1E-19180IPR004883Lateral organ boundaries, LOB
PROSITE profilePS5089115.661185IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    Send to blast
MAPYLPSKEP DKFDRVHKVF GVENVYKILS RLEESWQSEY AVNALCYEAE ARIHDPIHGY  60
VGPQMIYNNI LNNLKREIDS AINELATQDL VVQWYYLREG RSAVRLAGRG RRAQGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-2018528111LOB family transfactor Ramosa2.1
5ly0_B2e-2018528111LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013595096.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1011522e-41AF101152.2 Brassica napus clone na10 SINE S1 integration site sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013595096.13e-82PREDICTED: LOB domain-containing protein 35-like
SwissprotQ9FFL36e-20LBD35_ARATH; LOB domain-containing protein 35
TrEMBLA0A0D3DFG54e-81A0A0D3DFG5_BRAOL; Uncharacterized protein
STRINGBo7g108130.16e-82(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45251455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35900.12e-22LOB domain-containing protein 35