PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013595131.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 157aa    MW: 17711.7 Da    PI: 10.2786
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013595131.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.11.7e-1693141153
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 
                     +++kGVr+++ +g+W AeI+dps +    r +lg+f tae+Aa+a++ a+ kl
  XP_013595131.1  93 TKHKGVRQKP-SGKWSAEIWDPSLQ---GRRWLGTFPTAEMAAEAYDDAAGKL 141
                     69******99.7*********9653...688******************9776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.89E-2193147No hitNo description
PfamPF008473.5E-993141IPR001471AP2/ERF domain
SMARTSM003801.1E-2294157IPR001471AP2/ERF domain
PROSITE profilePS5103218.99394155IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-2094146IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-1494146IPR016177DNA-binding domain
PRINTSPR003671.7E-695106IPR001471AP2/ERF domain
PRINTSPR003671.7E-6117133IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MGIRWEALNL RPKEETGESR GGGRPEEKRQ RRTSFRHAPV TNLTQNHQTF SFDKRSRACD  60
HGFCSDTSDI QRQSIAGCYG CAFPRREEIK KETKHKGVRQ KPSGKWSAEI WDPSLQGRRW  120
LGTFPTAEMA AEAYDDAAGK LVKRKASRSG TANGEEA
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013595131.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013595131.11e-114PREDICTED: ethylene-responsive transcription factor ERF120-like
SwissprotQ9SK672e-33EF120_ARATH; Ethylene-responsive transcription factor ERF120
TrEMBLA0A0D3DGB17e-54A0A0D3DGB1_BRAOL; Uncharacterized protein
STRINGBo7g111100.11e-54(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34721562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20350.12e-32ERF family protein