PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013595483.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

WOX

Protein Properties

Length: 261aa MW: 29076.2 Da PI: 5.0318

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013595483.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.1	8.6e-20	93	153	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + +ps++++++++++l ++ e++V++WFqNrRa+ k+ XP_013595483.1 93 RQRWTPTPVQLQILERIFDQgIGTPSKQKIKDITEELsqhgQIAEQNVYNWFQNRRARSKR 153 89***************99************************************97 PP
2	Wus_type_Homeobox	103.3	1.6e-33	93	155	3	65
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 r+RWtPtp Q++iLe+++++G+ tP+k++i++it+eL+++G+i ++NV++WFQNr+aR+++kq XP_013595483.1 93 RQRWTPTPVQLQILERIFDQGIGTPSKQKIKDITEELSQHGQIAEQNVYNWFQNRRARSKRKQ 155 79***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.13E-17	87	155	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.074	89	154	IPR001356	Homeobox domain
SMART	SM00389	3.3E-13	91	158	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.2E-15	91	156	IPR009057	Homeodomain-like
Pfam	PF00046	1.3E-17	93	153	IPR001356	Homeobox domain
CDD	cd00086	6.88E-12	93	155	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MMEWDNQQQP SNNPSSNLQG IDVNGGSGSG GMYVKVMTDE QLETLRKQIA IYATICERLV 60 EMHKTLTSQQ DLAGRVGGLY ADPTFGHKMT GGRQRWTPTP VQLQILERIF DQGIGTPSKQ 120 KIKDITEELS QHGQIAEQNV YNWFQNRRAR SKRKQHGGGG VGSSSNNNNG ESEVEAETET 180 VNEKRKMPES LLVFPDGNKN AIGTTSATSP RPEDLYFQSP EMSSDLDLLG VLSNPRDEHF 240 VGKMGLSESY NMYDHVEDYG M

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	146	154	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00617	PBM	Transfer from AT4G35550	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013595483.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013595483.1	0.0	PREDICTED: WUSCHEL-related homeobox 13-like
Swissprot	O81788	1e-133	WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBL	A0A0D3DHV0	0.0	A0A0D3DHV0_BRAOL; Uncharacterized protein
STRING	Bo7g117480.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4620	28	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	1e-126	WUSCHEL related homeobox 13

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605]