PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013595897.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 220aa    MW: 25695.8 Da    PI: 6.1577
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013595897.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.42.9e-1962115457
                     -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
        Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                     ++++++eq++ Le  F  ++++  e++ +LA++lgL+ rqV vWFqNrRa++k+
  XP_013595897.1  62 KRKLSDEQVRMLEMSFGLEHKLESERKNRLASELGLDPRQVAVWFQNRRARWKN 115
                     45899***********************************************95 PP
2HD-ZIP_I/II121.63.9e-3961151292
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     +kr+ls+eqv++LE+sF  e+kLe+erK++la+eLgl+prqvavWFqnrRAR+k+k+lE +y++Lk+++++++ ++++L++ev +L+e+l 
  XP_013595897.1  61 RKRKLSDEQVRMLEMSFGLEHKLESERKNRLASELGLDPRQVAVWFQNRRARWKNKRLEDEYTKLKNEHENVVVQKCHLDSEVLHLKEQLY 151
                     8***************************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.68256116IPR001356Homeobox domain
SuperFamilySSF466895.56E-1859123IPR009057Homeodomain-like
SMARTSM003893.0E-1859120IPR001356Homeobox domain
CDDcd000861.57E-1561117No hitNo description
PfamPF000461.3E-1662115IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.3E-1963122IPR009057Homeodomain-like
PRINTSPR000311.5E-58796IPR000047Helix-turn-helix motif
PROSITE patternPS00027091114IPR017970Homeobox, conserved site
PRINTSPR000311.5E-596112IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MNNQNVNDNN LLLISRMYPN VYASSVPQQV DSKPVRPRRR RKSKNVEMAQ EGGDGSNGWF  60
RKRKLSDEQV RMLEMSFGLE HKLESERKNR LASELGLDPR QVAVWFQNRR ARWKNKRLED  120
EYTKLKNEHE NVVVQKCHLD SEVLHLKEQL YDAEIEIQRL AQRVEGALSN SPISSSISVE  180
ANLTTPFFGD YQIGDDGEGY ENLFYSPEYI DVLEWMSQLM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13843RRRKSK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013595897.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013595897.11e-163PREDICTED: homeobox-leucine zipper protein ATHB-21-like isoform X2
SwissprotQ9ZU701e-120ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21
TrEMBLA0A397YLD81e-159A0A397YLD8_BRACM; Uncharacterized protein
TrEMBLM4EH341e-159M4EH34_BRARP; Uncharacterized protein
STRINGBra028099.1-P1e-160(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18550.11e-100homeobox protein 21
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]