PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013595911.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 339aa    MW: 38511.5 Da    PI: 8.2398
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013595911.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.35e-178831495
                    T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
                    + l++p ++++e     + +kt +l+ + g  W+v++  ++k++++ ++kGW++Fv +n L +gDf++F ++g + fe   +
  XP_013595911.1  8 CSLMIPISYTDELP--RTLPKTAILQGTGGCFWKVEM--KRKRDEVHFGKGWNKFVTDNSLTDGDFLTFVYNGANVFEV--S 83
                    77999999997765..66999****************..********************************99888844..3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010194.5E-11188IPR003340B3 DNA binding domain
PROSITE profilePS5086314.212188IPR003340B3 DNA binding domain
CDDcd100171.89E-14485No hitNo description
Gene3DG3DSA:2.40.330.103.7E-18887IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.39E-19890IPR015300DNA-binding pseudobarrel domain
PfamPF023622.2E-13881IPR003340B3 DNA binding domain
SuperFamilySSF1019362.55E-7238323IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.2E-6240331IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.13243337IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MIVLLRFCSL MIPISYTDEL PRTLPKTAIL QGTGGCFWKV EMKRKRDEVH FGKGWNKFVT  60
DNSLTDGDFL TFVYNGANVF EVSIYGLGGC KEMRAVTEVE EVKEDSVVSL SSTDSDTSSK  120
SEVANTISKN KGKSQVVEVE DESEEAEAET CSESTVAKTT TGSRNKGKKK EKVVGSSNED  180
SDSDYTEANE DSESDDTEAS DQLNAFSESS NTVAQPKKKR ERVTVKKIKD PERYLVDPKN  240
VFFETNVKNR PYELLVSAQL VKDYDLKFKK LVYYTDYHKD GKLQAKTTKW KDNRVCIKKW  300
NRICKRNKLK KGDGILCELK RKEGFVYAVR IHIVREKDL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013595911.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013595911.10.0PREDICTED: B3 domain-containing protein At4g34400-like isoform X2
SwissprotQ9SZ052e-95Y3440_ARATH; B3 domain-containing protein At4g34400
TrEMBLA0A0D3DHN60.0A0A0D3DHN6_BRAOL; Uncharacterized protein
TrEMBLA0A3N6RTJ20.0A0A3N6RTJ2_BRACR; Uncharacterized protein
STRINGBo7g116840.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34400.14e-46B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Richter R, et al.
    Floral regulators FLC and SOC1 directly regulate expression of the B3-type transcription factor TARGET OF FLC AND SVP 1 at the Arabidopsis shoot apex via antagonistic chromatin modifications.
    PLoS Genet., 2019. 15(4): p. e1008065
    [PMID:30946745]