PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013596052.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ZF-HD
Protein Properties Length: 245aa    MW: 27886.9 Da    PI: 10.4065
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013596052.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer932.6e-2952106358
     ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                     +++Y+eC+kNhAa +Gg++vDGC+Efmp  geegt+ alkCaAC+CHR+FHR+ev 
  XP_013596052.1  52 AAKYEECQKNHAALTGGQVVDGCCEFMPG-GEEGTPGALKCAACNCHRSFHRKEVY 106
                     689*************************9.999********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047703.7E-2753105IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.1E-2654105IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-2154105IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152324.27355104IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.1E-16161234IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.4E-24168234IPR009057Homeodomain-like
PROSITE profilePS500718.584171235IPR001356Homeobox domain
TIGRFAMsTIGR015653.1E-23173230IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MEHGGKCNAI TSTTITLKAK PHTNPDPKTK PGSDPFLIKK ENQKPRTRSD QAAKYEECQK  60
NHAALTGGQV VDGCCEFMPG GEEGTPGALK CAACNCHRSF HRKEVYGHRN STQEELISPT  120
FYRSSNSYKA IHPRGVYPTG EIGRRTSSSS EDMKKILNQN SDGKGLTMIM RKKKRVRTKI  180
NEGQKKKMKE FAQRLGWSIQ KKDEEEIDKF CRTVNLRRQV FRVWMHNNKQ AMKRNGNICD  240
LQKLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-151742311875ZF-HD homeobox family protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172186KKRVRTKINEGQKKK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in flowers and inflorescence. {ECO:0000269|PubMed:16428600}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013596052.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1891890.0AC189189.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB002E24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013596052.10.0PREDICTED: zinc-finger homeodomain protein 7-like
SwissprotQ9SVL01e-123ZHD7_ARATH; Zinc-finger homeodomain protein 7
TrEMBLA0A078GV380.0A0A078GV38_BRANA; BnaC07g31930D protein
TrEMBLA0A0D3DDV90.0A0A0D3DDV9_BRAOL; Uncharacterized protein
TrEMBLA0A3P6F8P50.0A0A3P6F8P5_BRAOL; Uncharacterized protein
STRINGBo7g100590.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM138541525
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50890.11e-125homeobox protein 28