PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013596090.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 192aa MW: 22481.2 Da PI: 8.5422

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013596090.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	43.8	5.5e-14	80	138	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 +r++r+ +NRe+ArrsR RKk++ieeL++ v++L N+ L +++ +l + + +e+ XP_013596090.1 80 RRAKRMVSNRESARRSRMRKKKQIEELQQQVEQLMILNHNLSEKVINLLESNHQILQEN 138 89******************************************999999988888887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.3E-14	76	140	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.22	78	141	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.7E-10	80	136	No hit	No description
SuperFamily	SSF57959	4.88E-11	80	132	No hit	No description
Pfam	PF00170	6.0E-12	80	138	IPR004827	Basic-leucine zipper domain
CDD	cd14702	7.17E-17	81	132	No hit	No description
PROSITE pattern	PS00036	0	83	98	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MITYPKQYME SSSVHRSDHC FDIFEGMPPQ DDHFNSTFLP NANFHVPSQS PNISTRSNNH 60 RFHLDPNGEH VYEGLVPDER RAKRMVSNRE SARRSRMRKK KQIEELQQQV EQLMILNHNL 120 SEKVINLLES NHQILQENSQ LKEKVSSFQL LMAEMLIPVR NVDGGSINDR NLNHHHHLRG 180 ETSTRTNTFF GR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013596090.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013596090.1	1e-141	PREDICTED: basic leucine zipper 34-like
TrEMBL	A0A0D3DDF1	1e-132	A0A0D3DDF1_BRAOL; Uncharacterized protein
STRING	Bo7g098020.1	1e-133	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6185	25	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60830.1	7e-65	basic leucine-zipper 70