PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013596094.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

GRF

Protein Properties

Length: 409aa MW: 44829.6 Da PI: 6.8931

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013596094.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	76	3.8e-24	163	208	1	46
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskees 46 d+ep+rC+RtDGKkWRCsr++++++k+CErH h++r rsrk++e+s XP_013596094.1 163 DMEPWRCKRTDGKKWRCSRNAVPDQKYCERHAHKSRPRSRKHVETS 208 79*****************************************975 PP
2	QLQ	49.7	1.2e-17	93	127	1	35
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqai 35 saF+ aQ+++L++Q ++K+++a++PvP+eLl + XP_013596094.1 93 SAFSEAQWHELERQRNIFKCMMASLPVPSELLTPF 127 89*****************************9885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	7.0E-11	93	129	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	17.563	94	129	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	3.3E-11	94	126	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.325	163	207	IPR014977	WRC domain
Pfam	PF08879	2.3E-19	164	206	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0009941	Cellular Component	chloroplast envelope
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence Send to blast
MTTRAERNKE DFVGGFGFGV VEHSHKDVML PSHHYHSYSS PSSASFCYCS NGAADPIFSA 60 SNTSSLGEMF SLEGSNASAA VSVADPFFTL TSSAFSEAQW HELERQRNIF KCMMASLPVP 120 SELLTPFSMN PSHTNNQDVT VTVARGGSLK LGIASNASNN TADMEPWRCK RTDGKKWRCS 180 RNAVPDQKYC ERHAHKSRPR SRKHVETSPH SHHSETRTTK NVASQFATPY PQFYGPPLSQ 240 FSAVSTLPPA SSSYDHHPNS GLRWLMKEGD SIATLNPEIH ESAQLKVGSS RELKRGFEYD 300 LNYIQNEPLV DQRFGALEGL LSPNRQETRR FLVEGEQDEA MGSSLTLSMA GGMEEGEGRS 360 QHQWISHEGP SWLCSTTPGG PLAEALCLGV PNNPSTSTTT TSSCSRSSS

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence Send to blast

MTTRAERNKE DFVGGFGFGV VEHSHKDVML PSHHYHSYSS PSSASFCYCS NGAADPIFSA  60
SNTSSLGEMF SLEGSNASAA VSVADPFFTL TSSAFSEAQW HELERQRNIF KCMMASLPVP  120
SELLTPFSMN PSHTNNQDVT VTVARGGSLK LGIASNASNN TADMEPWRCK RTDGKKWRCS  180
RNAVPDQKYC ERHAHKSRPR SRKHVETSPH SHHSETRTTK NVASQFATPY PQFYGPPLSQ  240
FSAVSTLPPA SSSYDHHPNS GLRWLMKEGD SIATLNPEIH ESAQLKVGSS RELKRGFEYD  300
LNYIQNEPLV DQRFGALEGL LSPNRQETRR FLVEGEQDEA MGSSLTLSMA GGMEEGEGRS  360
QHQWISHEGP SWLCSTTPGG PLAEALCLGV PNNPSTSTTT TSSCSRSSS

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Predominantly expressed in shoot tips and flowers. {ECO:0000269\|PubMed:12974814}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013596094.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269\|PubMed:15200956, ECO:0000269\|PubMed:19453503}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013596094.1	0.0	PREDICTED: growth-regulating factor 8-like isoform X1
Swissprot	Q9SU44	1e-177	GRF8_ARATH; Growth-regulating factor 8
TrEMBL	A0A0D3DFT6	0.0	A0A0D3DFT6_BRAOL; Uncharacterized protein
STRING	Bo7g109350.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7836	26	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24150.1	1e-174	growth-regulating factor 8

Publications ? help Back to Top
Cao Y,Han Y,Jin Q,Lin Y,Cai Y Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa). Front Plant Sci, 2016. 7: p. 1750 [PMID:27933074]