PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013596121.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 252aa    MW: 25873.9 Da    PI: 10.0977
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013596121.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.73.5e-073861225
                    -S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                    k ++C  f+ t  C++Gd+C+F H
  XP_013596121.1 38 KSKPCTKFFSTSGCPFGDNCHFLH 61
                    7789******************** PP
2zf-CCCH33.47.9e-11218243127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +kt+ C +fa+ G C +GdrC+FaHg+
  XP_013596121.1 218 FKTKMCERFAK-GNCTFGDRCHFAHGE 243
                     69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.0843664IPR000571Zinc finger, CCCH-type
SMARTSM003560.0683663IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-63763IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-53861IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-83861IPR000571Zinc finger, CCCH-type
SuperFamilySSF547914.24E-15105186IPR004088K Homology domain, type 1
SMARTSM003224.2E-11115185IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.101.3E-15115184IPR004088K Homology domain, type 1
PROSITE profilePS5008414.32116180IPR004088K Homology domain, type 1
CDDcd001053.45E-13118180No hitNo description
PfamPF000131.8E-11118182IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.106.6E-16212247IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.765217244IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-8217247IPR000571Zinc finger, CCCH-type
SMARTSM003569.1E-7217243IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-7218243IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MDTRKRAGSF NSNGGGGGGG SKKSKQEMES YSTGLGSKSK PCTKFFSTSG CPFGDNCHFL  60
HYVPGGYNAV AQLTNMALPM PQASRNMQGP GGGGGGRFSG RGGESGPGHV SSFGASATAK  120
ISVDASLAGA IIGKGGVSSK QICRQTGAKL SIQDHERDPN LKNIELEGTF EQINEASVMV  180
RELIGRLNSA ASRRPPGGGG GIGGGVGSEG KPHPGSNFKT KMCERFAKGN CTFGDRCHFA  240
HGEAELRRSG IA
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013596121.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013596121.10.0PREDICTED: zinc finger CCCH domain-containing protein 36-like
RefseqXP_013596188.10.0PREDICTED: zinc finger CCCH domain-containing protein 36-like
RefseqXP_013712673.10.0zinc finger CCCH domain-containing protein 36-like
RefseqXP_022550987.10.0zinc finger CCCH domain-containing protein 36-like
SwissprotQ9C7C31e-139C3H36_ARATH; Zinc finger CCCH domain-containing protein 36
TrEMBLA0A0D3AEC20.0A0A0D3AEC2_BRAOL; Uncharacterized protein
STRINGBo1g139580.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23362875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.11e-123C3H family protein
Publications ? help Back to Top
  1. Yan Z,Jia J,Yan X,Shi H,Han Y
    Arabidopsis KHZ1 and KHZ2, two novel non-tandem CCCH zinc-finger and K-homolog domain proteins, have redundant roles in the regulation of flowering and senescence.
    Plant Mol. Biol., 2017. 95(6): p. 549-565
    [PMID:29076025]