PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013596156.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MIKC_MADS
Protein Properties Length: 177aa    MW: 20343.6 Da    PI: 10.0691
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013596156.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.87.8e-30959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k ienk+nrqvtf+kRr+g+lKKA+ELSvLCdaeva+iifs++gk ye++s
  XP_013596156.1  9 KMIENKINRQVTFAKRRKGLLKKAHELSVLCDAEVALIIFSNRGKPYEFCS 59
                    68***********************************************96 PP
2K-box72.21.6e-24951631785
           K-box  17 lqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85 
                     + qe+ kLk++++ L r+qR+llGedL++Ls keL++Le++L++slkkiR+ +   +l+qi++lq k  
  XP_013596156.1  95 SLQEYLKLKERYDALLRTQRNLLGEDLGPLSTKELESLERRLDSSLKKIRALRVLTMLDQINDLQSKVP 163
                     569**************************************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.8E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.721161IPR002100Transcription factor, MADS-box
CDDcd002654.74E-41276No hitNo description
SuperFamilySSF554559.03E-34281IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-30323IPR002100Transcription factor, MADS-box
PfamPF003199.8E-261157IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-303859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.49692177IPR002487Transcription factor, K-box
PfamPF014861.4E-1896162IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MGRGKVELKM IENKINRQVT FAKRRKGLLK KAHELSVLCD AEVALIIFSN RGKPYEFCSS  60
SSMIRTLERY QKCKYGPQEP NVPSRDEALA VELSSLQEYL KLKERYDALL RTQRNLLGED  120
LGPLSTKELE SLERRLDSSL KKIRALRVLT MLDQINDLQS KVPGAARSWN ESRTKCE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A2e-4375161186Developmental protein SEPALLATA 3
4ox0_B2e-4375161186Developmental protein SEPALLATA 3
4ox0_C2e-4375161186Developmental protein SEPALLATA 3
4ox0_D2e-4375161186Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor active in inflorescence development and floral organogenesis.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013596156.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0331571e-170BT033157.1 Arabidopsis thaliana unknown protein (At1g24260) mRNA, complete cds.
GenBankY086261e-170Y08626.1 S.alba mRNA for MADS D protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013596156.11e-126PREDICTED: agamous-like MADS-box protein AGL9 homolog
SwissprotO040672e-95AGL9_SINAL; Agamous-like MADS-box protein AGL9 homolog
TrEMBLA0A397YJ493e-92A0A397YJ49_BRACM; Uncharacterized protein
TrEMBLA0A397YR033e-92A0A397YR03_BRACM; Uncharacterized protein
TrEMBLF4I9723e-92F4I972_ARATH; K-box region and MADS-box transcription factor family protein
TrEMBLM4EML23e-92M4EML2_BRARP; Uncharacterized protein
STRINGBra030032.1-P5e-93(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62202644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24260.37e-85MIKC_MADS family protein
Publications ? help Back to Top
  1. Bonhomme F,Sommer H,Bernier G,Jacqmard A
    Characterization of SaMADS D from Sinapis alba suggests a dual function of the gene: in inflorescence development and floral organogenesis.
    Plant Mol. Biol., 1997. 34(4): p. 573-82
    [PMID:9247539]