PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013596230.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

G2-like

Protein Properties

Length: 255aa MW: 28311.6 Da PI: 7.9319

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013596230.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.6	4.9e-32	31	84	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH++F++av+ LGG+++AtPk il++m+v gLt++hvkSHLQ+YR XP_013596230.1 31 PRLRWTPELHRCFLNAVDMLGGQHRATPKLILKMMDVRGLTISHVKSHLQMYRG 84 8****************************************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.8E-29	27	84	IPR009057	Homeodomain-like
PROSITE profile	PS51294	14.229	27	87	IPR017930	Myb domain
SuperFamily	SSF46689	1.79E-15	31	83	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.3E-24	31	84	IPR006447	Myb domain, plants
Pfam	PF00249	2.0E-9	32	83	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MGTCGGRNGN DVGFNGHGGG RVRPYVRSPV PRLRWTPELH RCFLNAVDML GGQHRATPKL 60 ILKMMDVRGL TISHVKSHLQ MYRGSKLTLG KSEESSLSSI RRRQDTEEDY LHDNLSLPSR 120 NDCLLGYHSF PLSSHSSLRG GRREYQTSQS GGGGDDDDFL HIINMEKTRE TTPFPSHHCH 180 KTTEKEKNTG QEQEGEDLSL SLSLNHHQWR SNGSSVSETS EAVSTCSAPF VFKDCFASSP 240 KIDLNLTLSV SLLSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	6e-19	32	86	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	6e-19	32	86	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	6e-19	32	86	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	6e-19	32	86	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013596230.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HM222924	8e-71	HM222924.1 Thellungiella parvula phosphatase, cyclin J18, clathrin assembly protein-related protein, BPC1, SGR5/ATIDD15, leucine-rich receptor kinase, endomemebrane protein 70, salt overly sensitive 1, glutamate decarboxylae 4, oligopeptide transport protein, peptide transporter, and NADH-ubiquinone oxidoreductase B18 genes, complete cds; and unknown genes.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013596230.1	0.0	PREDICTED: putative Myb family transcription factor At1g14600
Refseq	XP_013736155.1	0.0	putative Myb family transcription factor At1g14600
Swissprot	Q700D9	2e-75	MYBF_ARATH; Putative Myb family transcription factor At1g14600
TrEMBL	A0A0D3DAA8	0.0	A0A0D3DAA8_BRAOL; Uncharacterized protein
STRING	Bo7g080160.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4694	18	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02060.1	2e-55	G2-like family protein